Draft regulons reconstructed by automated conservative propagation


Template (reference) regulons			Propagated regulons
Regulog collection	Genomes	TF regulons		Taxonomic group	Genomes	TF regulons
Lactobacillaceae	15	485	➠	Lactobacillales	29	855

Studied genomes and reconstructed regulon statistics
	Genomes	Regulons	Sites
	Carnobacterium sp. AT7	13	74
*	Lactobacillus acidophilus NCFM	27	113
*	Lactobacillus brevis ATCC 367	38	139
*	Lactobacillus casei ATCC 334	40	135
	Lactobacillus casei BL23	39	128
	Lactobacillus crispatus ST1	22	86
	Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842	15	41
*	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	17	43
*	Lactobacillus fermentum IFO 3956	29	122
	Lactobacillus gasseri ATCC 33323	25	93
*	Lactobacillus helveticus DPC 4571	21	69
	Lactobacillus johnsonii FI9785	23	94
*	Lactobacillus johnsonii NCC 533	26	105
	Lactobacillus paracasei subsp. paracasei 8700:2	39	133
	Lactobacillus plantarum JDM1	44	217
*	Lactobacillus plantarum WCFS1	45	222
	Lactobacillus reuteri 100-23	22	90
	Lactobacillus reuteri DSM 20016	30	132
*	Lactobacillus reuteri JCM 1112	31	131
*	Lactobacillus rhamnosus GG	38	126
	Lactobacillus rhamnosus HN001	36	124
	Lactobacillus rhamnosus Lc 705	38	119
*	Lactobacillus sakei subsp. sakei 23K	32	128
*	Lactobacillus salivarius subsp. salivarius UCC118	32	166
	Leuconostoc citreum KM20	19	116
*	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	32	173
	Oenococcus oeni ATCC BAA-1163	21	71
*	Oenococcus oeni PSU-1	24	98
*	Pediococcus pentosaceus ATCC 25745	37	151

*	- reference regulons from this genome have been used as a template for the conservative propagation

Genomic distribution of propagated regulons

Reference regulog
AdcR	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1 AdcR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	-	-	-
AgaR2	-	1 AgaR2 Lactobacillus acidophilus NCFM	-	-	1 AgaR2 Lactobacillus casei BL23	1 AgaR2 Lactobacillus crispatus ST1	-	-	-	2 AgaR2 Lactobacillus gasseri ATCC 33323	1 AgaR2 Lactobacillus helveticus DPC 4571	2 AgaR2 Lactobacillus johnsonii FI9785	2 AgaR2 Lactobacillus johnsonii NCC 533	1 AgaR2 Lactobacillus paracasei subsp. paracasei 8700:2	-	-	-	-	-	1 AgaR2 Lactobacillus rhamnosus GG	1 AgaR2 Lactobacillus rhamnosus HN001	1 AgaR2 Lactobacillus rhamnosus Lc 705	-	-	-	-	-	-	1 AgaR2 Pediococcus pentosaceus ATCC 25745
AguR	-	-	1 AguR Lactobacillus brevis ATCC 367	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1 AguR Lactobacillus sakei subsp. sakei 23K	-	-	-	-	-	1 AguR Pediococcus pentosaceus ATCC 25745
AraR	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1 AraR Lactobacillus plantarum JDM1	1 AraR Lactobacillus plantarum WCFS1	-	-	-	-	-	-	-	-	-	-	-	-	-
ArgR	7 ArgR Carnobacterium sp. AT7	2 ArgR Lactobacillus acidophilus NCFM	1 ArgR Lactobacillus brevis ATCC 367	4 ArgR Lactobacillus casei ATCC 334	4 ArgR Lactobacillus casei BL23	1 ArgR Lactobacillus crispatus ST1	1 ArgR Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842	1 ArgR Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	4 ArgR Lactobacillus fermentum IFO 3956	2 ArgR Lactobacillus gasseri ATCC 33323	1 ArgR Lactobacillus helveticus DPC 4571	2 ArgR Lactobacillus johnsonii FI9785	2 ArgR Lactobacillus johnsonii NCC 533	4 ArgR Lactobacillus paracasei subsp. paracasei 8700:2	4 ArgR Lactobacillus plantarum JDM1	4 ArgR Lactobacillus plantarum WCFS1	2 ArgR Lactobacillus reuteri 100-23	5 ArgR Lactobacillus reuteri DSM 20016	5 ArgR Lactobacillus reuteri JCM 1112	4 ArgR Lactobacillus rhamnosus GG	4 ArgR Lactobacillus rhamnosus HN001	4 ArgR Lactobacillus rhamnosus Lc 705	2 ArgR Lactobacillus sakei subsp. sakei 23K	4 ArgR Lactobacillus salivarius subsp. salivarius UCC118	7 ArgR Leuconostoc citreum KM20	7 ArgR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	2 ArgR Oenococcus oeni ATCC BAA-1163	2 ArgR Oenococcus oeni PSU-1	3 ArgR Pediococcus pentosaceus ATCC 25745
BfrR	-	1 BfrR Lactobacillus acidophilus NCFM	-	-	-	1 BfrR Lactobacillus crispatus ST1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
BirA	-	-	-	-	-	-	-	-	1 BirA Lactobacillus fermentum IFO 3956	-	-	-	-	-	2 BirA Lactobacillus plantarum JDM1	2 BirA Lactobacillus plantarum WCFS1	1 BirA Lactobacillus reuteri 100-23	1 BirA Lactobacillus reuteri DSM 20016	1 BirA Lactobacillus reuteri JCM 1112	-	-	-	-	1 BirA Lactobacillus salivarius subsp. salivarius UCC118	-	2 BirA Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	1 BirA Oenococcus oeni ATCC BAA-1163	1 BirA Oenococcus oeni PSU-1	1 BirA Pediococcus pentosaceus ATCC 25745
BusR	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2 BusR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	-	-	-
CcpA	17 CcpA Carnobacterium sp. AT7	37 CcpA Lactobacillus acidophilus NCFM	32 CcpA Lactobacillus brevis ATCC 367	32 CcpA Lactobacillus casei ATCC 334	31 CcpA Lactobacillus casei BL23	30 CcpA Lactobacillus crispatus ST1	5 CcpA Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842	5 CcpA Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	30 CcpA Lactobacillus fermentum IFO 3956	28 CcpA Lactobacillus gasseri ATCC 33323	18 CcpA Lactobacillus helveticus DPC 4571	27 CcpA Lactobacillus johnsonii FI9785	35 CcpA Lactobacillus johnsonii NCC 533	31 CcpA Lactobacillus paracasei subsp. paracasei 8700:2	53 CcpA Lactobacillus plantarum JDM1	57 CcpA Lactobacillus plantarum WCFS1	25 CcpA Lactobacillus reuteri 100-23	31 CcpA Lactobacillus reuteri DSM 20016	30 CcpA Lactobacillus reuteri JCM 1112	31 CcpA Lactobacillus rhamnosus GG	35 CcpA Lactobacillus rhamnosus HN001	32 CcpA Lactobacillus rhamnosus Lc 705	33 CcpA Lactobacillus sakei subsp. sakei 23K	34 CcpA Lactobacillus salivarius subsp. salivarius UCC118	24 CcpA Leuconostoc citreum KM20	30 CcpA Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	12 CcpA Oenococcus oeni ATCC BAA-1163	23 CcpA Oenococcus oeni PSU-1	44 CcpA Pediococcus pentosaceus ATCC 25745
CcpB	-	-	-	1 CcpB Lactobacillus casei ATCC 334	1 CcpB Lactobacillus casei BL23	-	-	-	-	-	-	-	-	1 CcpB Lactobacillus paracasei subsp. paracasei 8700:2	1 CcpB Lactobacillus plantarum JDM1	1 CcpB Lactobacillus plantarum WCFS1	-	-	-	-	-	-	1 CcpB Lactobacillus sakei subsp. sakei 23K	-	-	-	-	-	1 CcpB Pediococcus pentosaceus ATCC 25745
CcpN	-	-	-	1 CcpN Lactobacillus casei ATCC 334	1 CcpN Lactobacillus casei BL23	-	-	-	-	-	-	-	-	1 CcpN Lactobacillus paracasei subsp. paracasei 8700:2	-	-	-	-	-	1 CcpN Lactobacillus rhamnosus GG	1 CcpN Lactobacillus rhamnosus HN001	-	2 CcpN Lactobacillus sakei subsp. sakei 23K	-	-	-	-	1 CcpN Oenococcus oeni PSU-1	-
CelR	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1 CelR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	-	-	-
CggR	-	1 CggR Lactobacillus acidophilus NCFM	1 CggR Lactobacillus brevis ATCC 367	1 CggR Lactobacillus casei ATCC 334	1 CggR Lactobacillus casei BL23	1 CggR Lactobacillus crispatus ST1	-	1 CggR Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	-	1 CggR Lactobacillus gasseri ATCC 33323	1 CggR Lactobacillus helveticus DPC 4571	1 CggR Lactobacillus johnsonii FI9785	1 CggR Lactobacillus johnsonii NCC 533	1 CggR Lactobacillus paracasei subsp. paracasei 8700:2	1 CggR Lactobacillus plantarum JDM1	1 CggR Lactobacillus plantarum WCFS1	-	-	-	1 CggR Lactobacillus rhamnosus GG	1 CggR Lactobacillus rhamnosus HN001	1 CggR Lactobacillus rhamnosus Lc 705	1 CggR Lactobacillus sakei subsp. sakei 23K	1 CggR Lactobacillus salivarius subsp. salivarius UCC118	-	-	-	-	1 CggR Pediococcus pentosaceus ATCC 25745
CopR	-	1 CopR Lactobacillus acidophilus NCFM	2 CopR Lactobacillus brevis ATCC 367	2 CopR Lactobacillus casei ATCC 334	1 CopR Lactobacillus casei BL23	1 CopR Lactobacillus crispatus ST1	1 CopR Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842	1 CopR Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	2 CopR Lactobacillus fermentum IFO 3956	1 CopR Lactobacillus gasseri ATCC 33323	2 CopR Lactobacillus helveticus DPC 4571	1 CopR Lactobacillus johnsonii FI9785	1 CopR Lactobacillus johnsonii NCC 533	2 CopR Lactobacillus paracasei subsp. paracasei 8700:2	3 CopR Lactobacillus plantarum JDM1	2 CopR Lactobacillus plantarum WCFS1	2 CopR Lactobacillus reuteri 100-23	2 CopR Lactobacillus reuteri DSM 20016	2 CopR Lactobacillus reuteri JCM 1112	1 CopR Lactobacillus rhamnosus GG	1 CopR Lactobacillus rhamnosus HN001	1 CopR Lactobacillus rhamnosus Lc 705	-	1 CopR Lactobacillus salivarius subsp. salivarius UCC118	-	1 CopR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	2 CopR Oenococcus oeni ATCC BAA-1163	1 CopR Oenococcus oeni PSU-1	1 CopR Pediococcus pentosaceus ATCC 25745
CtsR	1 CtsR Carnobacterium sp. AT7	-	1 CtsR Lactobacillus brevis ATCC 367	1 CtsR Lactobacillus casei ATCC 334	2 CtsR Lactobacillus casei BL23	-	-	-	1 CtsR Lactobacillus fermentum IFO 3956	-	-	-	-	2 CtsR Lactobacillus paracasei subsp. paracasei 8700:2	2 CtsR Lactobacillus plantarum JDM1	2 CtsR Lactobacillus plantarum WCFS1	1 CtsR Lactobacillus reuteri 100-23	2 CtsR Lactobacillus reuteri DSM 20016	2 CtsR Lactobacillus reuteri JCM 1112	2 CtsR Lactobacillus rhamnosus GG	2 CtsR Lactobacillus rhamnosus HN001	2 CtsR Lactobacillus rhamnosus Lc 705	3 CtsR Lactobacillus sakei subsp. sakei 23K	1 CtsR Lactobacillus salivarius subsp. salivarius UCC118	-	-	4 CtsR Oenococcus oeni ATCC BAA-1163	4 CtsR Oenococcus oeni PSU-1	2 CtsR Pediococcus pentosaceus ATCC 25745
CzcR1	-	-	-	-	-	-	2 CzcR1 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842	2 CzcR1 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	-	2 CzcR1 Lactobacillus gasseri ATCC 33323	-	2 CzcR1 Lactobacillus johnsonii FI9785	2 CzcR1 Lactobacillus johnsonii NCC 533	-	-	-	-	1 CzcR1 Lactobacillus reuteri DSM 20016	1 CzcR1 Lactobacillus reuteri JCM 1112	-	-	-	-	-	-	-	-	-	-
CzcR2	-	-	1 CzcR2 Lactobacillus brevis ATCC 367	-	1 CzcR2 Lactobacillus casei BL23	-	-	-	-	-	-	-	-	1 CzcR2 Lactobacillus paracasei subsp. paracasei 8700:2	-	-	-	-	-	1 CzcR2 Lactobacillus rhamnosus GG	1 CzcR2 Lactobacillus rhamnosus HN001	1 CzcR2 Lactobacillus rhamnosus Lc 705	-	-	-	-	-	-	2 CzcR2 Pediococcus pentosaceus ATCC 25745
DeoR	-	-	1 DeoR Lactobacillus brevis ATCC 367	-	-	-	-	-	2 DeoR Lactobacillus fermentum IFO 3956	-	-	-	-	-	-	1 DeoR Lactobacillus plantarum WCFS1	-	2 DeoR Lactobacillus reuteri DSM 20016	2 DeoR Lactobacillus reuteri JCM 1112	-	-	-	1 DeoR Lactobacillus sakei subsp. sakei 23K	-	1 DeoR Leuconostoc citreum KM20	-	-	-	-
ExuR	-	-	1 ExuR Lactobacillus brevis ATCC 367	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1 ExuR Lactobacillus sakei subsp. sakei 23K	-	-	-	-	-	-
FabT	-	-	1 FabT Lactobacillus brevis ATCC 367	1 FabT Lactobacillus casei ATCC 334	1 FabT Lactobacillus casei BL23	-	-	-	1 FabT Lactobacillus fermentum IFO 3956	-	1 FabT Lactobacillus helveticus DPC 4571	-	-	1 FabT Lactobacillus paracasei subsp. paracasei 8700:2	-	-	2 FabT Lactobacillus reuteri 100-23	2 FabT Lactobacillus reuteri DSM 20016	2 FabT Lactobacillus reuteri JCM 1112	2 FabT Lactobacillus rhamnosus GG	2 FabT Lactobacillus rhamnosus HN001	2 FabT Lactobacillus rhamnosus Lc 705	-	1 FabT Lactobacillus salivarius subsp. salivarius UCC118	-	1 FabT Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	-	-	-
FatR	-	-	-	1 FatR Lactobacillus casei ATCC 334	1 FatR Lactobacillus casei BL23	-	-	-	-	-	-	-	-	1 FatR Lactobacillus paracasei subsp. paracasei 8700:2	-	-	-	-	-	1 FatR Lactobacillus rhamnosus GG	1 FatR Lactobacillus rhamnosus HN001	1 FatR Lactobacillus rhamnosus Lc 705	-	-	-	-	1 FatR Oenococcus oeni ATCC BAA-1163	3 FatR Oenococcus oeni PSU-1	-
FlpA	2 FlpA Carnobacterium sp. AT7	1 FlpA Lactobacillus acidophilus NCFM	2 FlpA Lactobacillus brevis ATCC 367	-	1 FlpA Lactobacillus casei BL23	2 FlpA Lactobacillus crispatus ST1	1 FlpA Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842	-	2 FlpA Lactobacillus fermentum IFO 3956	2 FlpA Lactobacillus gasseri ATCC 33323	-	1 FlpA Lactobacillus johnsonii FI9785	1 FlpA Lactobacillus johnsonii NCC 533	-	4 FlpA Lactobacillus plantarum JDM1	4 FlpA Lactobacillus plantarum WCFS1	2 FlpA Lactobacillus reuteri 100-23	1 FlpA Lactobacillus reuteri DSM 20016	1 FlpA Lactobacillus reuteri JCM 1112	1 FlpA Lactobacillus rhamnosus GG	2 FlpA Lactobacillus rhamnosus HN001	1 FlpA Lactobacillus rhamnosus Lc 705	1 FlpA Lactobacillus sakei subsp. sakei 23K	4 FlpA Lactobacillus salivarius subsp. salivarius UCC118	2 FlpA Leuconostoc citreum KM20	1 FlpA Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	-	3 FlpA Oenococcus oeni PSU-1	2 FlpA Pediococcus pentosaceus ATCC 25745
FlrR	-	-	2 FlrR Lactobacillus brevis ATCC 367	-	-	-	-	-	-	-	-	-	-	-	2 FlrR Lactobacillus plantarum JDM1	2 FlrR Lactobacillus plantarum WCFS1	-	-	-	-	-	-	2 FlrR Lactobacillus sakei subsp. sakei 23K	-	-	-	-	-	-
FruR	2 FruR Carnobacterium sp. AT7	1 FruR Lactobacillus acidophilus NCFM	-	1 FruR Lactobacillus casei ATCC 334	1 FruR Lactobacillus casei BL23	1 FruR Lactobacillus crispatus ST1	1 FruR Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842	1 FruR Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	-	1 FruR Lactobacillus gasseri ATCC 33323	1 FruR Lactobacillus helveticus DPC 4571	1 FruR Lactobacillus johnsonii FI9785	1 FruR Lactobacillus johnsonii NCC 533	1 FruR Lactobacillus paracasei subsp. paracasei 8700:2	1 FruR Lactobacillus plantarum JDM1	1 FruR Lactobacillus plantarum WCFS1	-	-	-	1 FruR Lactobacillus rhamnosus GG	1 FruR Lactobacillus rhamnosus HN001	1 FruR Lactobacillus rhamnosus Lc 705	1 FruR Lactobacillus sakei subsp. sakei 23K	1 FruR Lactobacillus salivarius subsp. salivarius UCC118	-	-	-	-	1 FruR Pediococcus pentosaceus ATCC 25745
FucR	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1 FucR Lactobacillus rhamnosus HN001	-	-	-	-	-	-	-	-
GalR	-	-	3 GalR Lactobacillus brevis ATCC 367	1 GalR Lactobacillus casei ATCC 334	1 GalR Lactobacillus casei BL23	1 GalR Lactobacillus crispatus ST1	-	-	1 GalR Lactobacillus fermentum IFO 3956	1 GalR Lactobacillus gasseri ATCC 33323	-	1 GalR Lactobacillus johnsonii FI9785	1 GalR Lactobacillus johnsonii NCC 533	1 GalR Lactobacillus paracasei subsp. paracasei 8700:2	3 GalR Lactobacillus plantarum JDM1	3 GalR Lactobacillus plantarum WCFS1	2 GalR Lactobacillus reuteri 100-23	4 GalR Lactobacillus reuteri DSM 20016	4 GalR Lactobacillus reuteri JCM 1112	1 GalR Lactobacillus rhamnosus GG	-	2 GalR Lactobacillus rhamnosus Lc 705	3 GalR Lactobacillus sakei subsp. sakei 23K	3 GalR Lactobacillus salivarius subsp. salivarius UCC118	1 GalR Leuconostoc citreum KM20	1 GalR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	1 GalR Oenococcus oeni ATCC BAA-1163	1 GalR Oenococcus oeni PSU-1	5 GalR Pediococcus pentosaceus ATCC 25745
GlnR	1 GlnR Carnobacterium sp. AT7	1 GlnR Lactobacillus acidophilus NCFM	3 GlnR Lactobacillus brevis ATCC 367	4 GlnR Lactobacillus casei ATCC 334	3 GlnR Lactobacillus casei BL23	-	-	-	-	-	1 GlnR Lactobacillus helveticus DPC 4571	-	-	4 GlnR Lactobacillus paracasei subsp. paracasei 8700:2	4 GlnR Lactobacillus plantarum JDM1	4 GlnR Lactobacillus plantarum WCFS1	-	-	-	4 GlnR Lactobacillus rhamnosus GG	4 GlnR Lactobacillus rhamnosus HN001	4 GlnR Lactobacillus rhamnosus Lc 705	1 GlnR Lactobacillus sakei subsp. sakei 23K	5 GlnR Lactobacillus salivarius subsp. salivarius UCC118	3 GlnR Leuconostoc citreum KM20	4 GlnR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	2 GlnR Oenococcus oeni ATCC BAA-1163	2 GlnR Oenococcus oeni PSU-1	1 GlnR Pediococcus pentosaceus ATCC 25745
GntR1	-	-	4 GntR1 Lactobacillus brevis ATCC 367	2 GntR1 Lactobacillus casei ATCC 334	2 GntR1 Lactobacillus casei BL23	-	-	-	-	-	-	-	-	2 GntR1 Lactobacillus paracasei subsp. paracasei 8700:2	1 GntR1 Lactobacillus plantarum JDM1	1 GntR1 Lactobacillus plantarum WCFS1	-	-	-	2 GntR1 Lactobacillus rhamnosus GG	2 GntR1 Lactobacillus rhamnosus HN001	2 GntR1 Lactobacillus rhamnosus Lc 705	2 GntR1 Lactobacillus sakei subsp. sakei 23K	-	2 GntR1 Leuconostoc citreum KM20	2 GntR1 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	2 GntR1 Oenococcus oeni ATCC BAA-1163	2 GntR1 Oenococcus oeni PSU-1	2 GntR1 Pediococcus pentosaceus ATCC 25745
GntR2	-	-	-	-	-	-	-	-	1 GntR2 Lactobacillus fermentum IFO 3956	-	-	-	-	-	-	-	-	1 GntR2 Lactobacillus reuteri DSM 20016	1 GntR2 Lactobacillus reuteri JCM 1112	-	-	-	-	-	-	-	-	-	-
GutR	-	-	-	1 GutR Lactobacillus casei ATCC 334	-	-	-	-	-	-	-	-	-	-	1 GutR Lactobacillus plantarum JDM1	2 GutR Lactobacillus plantarum WCFS1	-	-	-	1 GutR Lactobacillus rhamnosus GG	1 GutR Lactobacillus rhamnosus HN001	1 GutR Lactobacillus rhamnosus Lc 705	-	1 GutR Lactobacillus salivarius subsp. salivarius UCC118	-	-	-	-	-
HrcA	1 HrcA Carnobacterium sp. AT7	6 HrcA Lactobacillus acidophilus NCFM	3 HrcA Lactobacillus brevis ATCC 367	6 HrcA Lactobacillus casei ATCC 334	6 HrcA Lactobacillus casei BL23	6 HrcA Lactobacillus crispatus ST1	5 HrcA Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842	5 HrcA Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	2 HrcA Lactobacillus fermentum IFO 3956	6 HrcA Lactobacillus gasseri ATCC 33323	5 HrcA Lactobacillus helveticus DPC 4571	6 HrcA Lactobacillus johnsonii FI9785	6 HrcA Lactobacillus johnsonii NCC 533	6 HrcA Lactobacillus paracasei subsp. paracasei 8700:2	2 HrcA Lactobacillus plantarum JDM1	2 HrcA Lactobacillus plantarum WCFS1	3 HrcA Lactobacillus reuteri 100-23	4 HrcA Lactobacillus reuteri DSM 20016	4 HrcA Lactobacillus reuteri JCM 1112	6 HrcA Lactobacillus rhamnosus GG	5 HrcA Lactobacillus rhamnosus HN001	4 HrcA Lactobacillus rhamnosus Lc 705	3 HrcA Lactobacillus sakei subsp. sakei 23K	2 HrcA Lactobacillus salivarius subsp. salivarius UCC118	3 HrcA Leuconostoc citreum KM20	4 HrcA Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	-	-	3 HrcA Pediococcus pentosaceus ATCC 25745
HxlR	-	-	1 HxlR Lactobacillus brevis ATCC 367	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1 HxlR Oenococcus oeni ATCC BAA-1163	1 HxlR Oenococcus oeni PSU-1	-
IolR	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1 IolR Lactobacillus rhamnosus GG	1 IolR Lactobacillus rhamnosus HN001	1 IolR Lactobacillus rhamnosus Lc 705	-	-	-	-	-	-	-
LBA0573	-	1 LBA0573 Lactobacillus acidophilus NCFM	-	-	-	-	-	1 LBA0573 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	-	1 LBA0573 Lactobacillus gasseri ATCC 33323	1 LBA0573 Lactobacillus helveticus DPC 4571	1 LBA0573 Lactobacillus johnsonii FI9785	-	-	-	-	-	-	-	-	-	-	-	1 LBA0573 Lactobacillus salivarius subsp. salivarius UCC118	-	-	-	-	-
LBA1472	-	2 LBA1472 Lactobacillus acidophilus NCFM	-	-	-	1 LBA1472 Lactobacillus crispatus ST1	-	-	-	-	-	-	1 LBA1472 Lactobacillus johnsonii NCC 533	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
LBA1638	-	1 LBA1638 Lactobacillus acidophilus NCFM	-	1 LBA1638 Lactobacillus casei ATCC 334	1 LBA1638 Lactobacillus casei BL23	1 LBA1638 Lactobacillus crispatus ST1	1 LBA1638 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842	1 LBA1638 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	-	1 LBA1638 Lactobacillus gasseri ATCC 33323	1 LBA1638 Lactobacillus helveticus DPC 4571	1 LBA1638 Lactobacillus johnsonii FI9785	1 LBA1638 Lactobacillus johnsonii NCC 533	1 LBA1638 Lactobacillus paracasei subsp. paracasei 8700:2	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
LJ1265	-	2 LJ1265 Lactobacillus acidophilus NCFM	-	-	-	-	-	-	-	-	-	-	2 LJ1265 Lactobacillus johnsonii NCC 533	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
LSEI_0081	-	-	-	2 LSEI_0081 Lactobacillus casei ATCC 334	2 LSEI_0081 Lactobacillus casei BL23	-	-	-	-	-	-	-	-	2 LSEI_0081 Lactobacillus paracasei subsp. paracasei 8700:2	-	-	-	-	-	2 LSEI_0081 Lactobacillus rhamnosus GG	2 LSEI_0081 Lactobacillus rhamnosus HN001	2 LSEI_0081 Lactobacillus rhamnosus Lc 705	-	-	-	-	1 LSEI_0081 Oenococcus oeni ATCC BAA-1163	2 LSEI_0081 Oenococcus oeni PSU-1	-
LSEI_0368	-	-	-	2 LSEI_0368 Lactobacillus casei ATCC 334	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2 LSEI_0368 Lactobacillus rhamnosus GG	-	-	-	-	-	-	-	-	-
LacR	-	1 LacR Lactobacillus acidophilus NCFM	-	-	-	1 LacR Lactobacillus crispatus ST1	-	-	2 LacR Lactobacillus fermentum IFO 3956	1 LacR Lactobacillus gasseri ATCC 33323	1 LacR Lactobacillus helveticus DPC 4571	-	2 LacR Lactobacillus johnsonii NCC 533	-	2 LacR Lactobacillus plantarum JDM1	2 LacR Lactobacillus plantarum WCFS1	-	1 LacR Lactobacillus reuteri DSM 20016	1 LacR Lactobacillus reuteri JCM 1112	-	-	-	-	-	-	2 LacR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	-	-	-
LacR	-	-	-	1 LacR Lactobacillus casei ATCC 334	1 LacR Lactobacillus casei BL23	-	-	-	-	-	-	-	-	1 LacR Lactobacillus paracasei subsp. paracasei 8700:2	-	-	-	-	-	1 LacR Lactobacillus rhamnosus GG	1 LacR Lactobacillus rhamnosus HN001	1 LacR Lactobacillus rhamnosus Lc 705	-	-	-	-	-	-	-
LexA	3 LexA Carnobacterium sp. AT7	4 LexA Lactobacillus acidophilus NCFM	8 LexA Lactobacillus brevis ATCC 367	9 LexA Lactobacillus casei ATCC 334	8 LexA Lactobacillus casei BL23	4 LexA Lactobacillus crispatus ST1	3 LexA Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842	4 LexA Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	6 LexA Lactobacillus fermentum IFO 3956	5 LexA Lactobacillus gasseri ATCC 33323	5 LexA Lactobacillus helveticus DPC 4571	5 LexA Lactobacillus johnsonii FI9785	5 LexA Lactobacillus johnsonii NCC 533	8 LexA Lactobacillus paracasei subsp. paracasei 8700:2	9 LexA Lactobacillus plantarum JDM1	9 LexA Lactobacillus plantarum WCFS1	3 LexA Lactobacillus reuteri 100-23	6 LexA Lactobacillus reuteri DSM 20016	6 LexA Lactobacillus reuteri JCM 1112	8 LexA Lactobacillus rhamnosus GG	8 LexA Lactobacillus rhamnosus HN001	8 LexA Lactobacillus rhamnosus Lc 705	6 LexA Lactobacillus sakei subsp. sakei 23K	4 LexA Lactobacillus salivarius subsp. salivarius UCC118	7 LexA Leuconostoc citreum KM20	9 LexA Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	5 LexA Oenococcus oeni ATCC BAA-1163	7 LexA Oenococcus oeni PSU-1	6 LexA Pediococcus pentosaceus ATCC 25745
Lp_2742	-	-	1 Lp_2742 Lactobacillus brevis ATCC 367	-	-	-	-	-	1 Lp_2742 Lactobacillus fermentum IFO 3956	-	-	-	-	-	1 Lp_2742 Lactobacillus plantarum JDM1	1 Lp_2742 Lactobacillus plantarum WCFS1	-	1 Lp_2742 Lactobacillus reuteri DSM 20016	1 Lp_2742 Lactobacillus reuteri JCM 1112	-	-	-	-	1 Lp_2742 Lactobacillus salivarius subsp. salivarius UCC118	-	-	-	-	2 Lp_2742 Pediococcus pentosaceus ATCC 25745
Lp_3221	-	-	-	2 Lp_3221 Lactobacillus casei ATCC 334	2 Lp_3221 Lactobacillus casei BL23	-	-	-	-	-	-	-	-	2 Lp_3221 Lactobacillus paracasei subsp. paracasei 8700:2	2 Lp_3221 Lactobacillus plantarum JDM1	1 Lp_3221 Lactobacillus plantarum WCFS1	-	-	-	2 Lp_3221 Lactobacillus rhamnosus GG	2 Lp_3221 Lactobacillus rhamnosus HN001	2 Lp_3221 Lactobacillus rhamnosus Lc 705	-	-	-	-	-	-	-
MalR	-	-	1 MalR Lactobacillus brevis ATCC 367	-	-	-	-	-	1 MalR Lactobacillus fermentum IFO 3956	-	-	-	-	-	3 MalR Lactobacillus plantarum JDM1	3 MalR Lactobacillus plantarum WCFS1	1 MalR Lactobacillus reuteri 100-23	1 MalR Lactobacillus reuteri DSM 20016	1 MalR Lactobacillus reuteri JCM 1112	-	-	-	-	1 MalR Lactobacillus salivarius subsp. salivarius UCC118	1 MalR Leuconostoc citreum KM20	2 MalR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	-	-	1 MalR Pediococcus pentosaceus ATCC 25745
MalR3	-	-	2 MalR3 Lactobacillus brevis ATCC 367	-	-	-	-	-	1 MalR3 Lactobacillus fermentum IFO 3956	-	-	-	-	-	4 MalR3 Lactobacillus plantarum JDM1	4 MalR3 Lactobacillus plantarum WCFS1	1 MalR3 Lactobacillus reuteri 100-23	2 MalR3 Lactobacillus reuteri DSM 20016	2 MalR3 Lactobacillus reuteri JCM 1112	-	1 MalR3 Lactobacillus rhamnosus HN001	1 MalR3 Lactobacillus rhamnosus Lc 705	-	-	-	4 MalR3 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	2 MalR3 Oenococcus oeni ATCC BAA-1163	2 MalR3 Oenococcus oeni PSU-1	-
MdxR	-	2 MdxR Lactobacillus acidophilus NCFM	-	2 MdxR Lactobacillus casei ATCC 334	2 MdxR Lactobacillus casei BL23	1 MdxR Lactobacillus crispatus ST1	-	-	-	2 MdxR Lactobacillus gasseri ATCC 33323	1 MdxR Lactobacillus helveticus DPC 4571	2 MdxR Lactobacillus johnsonii FI9785	2 MdxR Lactobacillus johnsonii NCC 533	2 MdxR Lactobacillus paracasei subsp. paracasei 8700:2	2 MdxR Lactobacillus plantarum JDM1	2 MdxR Lactobacillus plantarum WCFS1	-	-	-	-	-	-	-	-	1 MdxR Leuconostoc citreum KM20	2 MdxR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	-	-	-
MleR	-	-	2 MleR Lactobacillus brevis ATCC 367	1 MleR Lactobacillus casei ATCC 334	1 MleR Lactobacillus casei BL23	-	-	-	-	-	-	-	-	1 MleR Lactobacillus paracasei subsp. paracasei 8700:2	2 MleR Lactobacillus plantarum JDM1	2 MleR Lactobacillus plantarum WCFS1	2 MleR Lactobacillus reuteri 100-23	2 MleR Lactobacillus reuteri DSM 20016	2 MleR Lactobacillus reuteri JCM 1112	2 MleR Lactobacillus rhamnosus GG	2 MleR Lactobacillus rhamnosus HN001	1 MleR Lactobacillus rhamnosus Lc 705	2 MleR Lactobacillus sakei subsp. sakei 23K	2 MleR Lactobacillus salivarius subsp. salivarius UCC118	-	2 MleR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	1 MleR Oenococcus oeni ATCC BAA-1163	1 MleR Oenococcus oeni PSU-1	2 MleR Pediococcus pentosaceus ATCC 25745
MntR	-	-	2 MntR Lactobacillus brevis ATCC 367	2 MntR Lactobacillus casei ATCC 334	2 MntR Lactobacillus casei BL23	-	-	-	1 MntR Lactobacillus fermentum IFO 3956	-	-	-	-	2 MntR Lactobacillus paracasei subsp. paracasei 8700:2	2 MntR Lactobacillus plantarum JDM1	2 MntR Lactobacillus plantarum WCFS1	1 MntR Lactobacillus reuteri 100-23	1 MntR Lactobacillus reuteri DSM 20016	1 MntR Lactobacillus reuteri JCM 1112	2 MntR Lactobacillus rhamnosus GG	2 MntR Lactobacillus rhamnosus HN001	2 MntR Lactobacillus rhamnosus Lc 705	3 MntR Lactobacillus sakei subsp. sakei 23K	1 MntR Lactobacillus salivarius subsp. salivarius UCC118	-	-	-	-	-
MtaR	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2 MtaR Lactobacillus plantarum JDM1	2 MtaR Lactobacillus plantarum WCFS1	-	-	-	-	-	-	-	-	-	-	-	-	-
MtlR	-	-	-	1 MtlR Lactobacillus casei ATCC 334	1 MtlR Lactobacillus casei BL23	-	-	-	-	-	-	-	-	1 MtlR Lactobacillus paracasei subsp. paracasei 8700:2	1 MtlR Lactobacillus plantarum JDM1	1 MtlR Lactobacillus plantarum WCFS1	-	-	-	1 MtlR Lactobacillus rhamnosus GG	1 MtlR Lactobacillus rhamnosus HN001	1 MtlR Lactobacillus rhamnosus Lc 705	-	1 MtlR Lactobacillus salivarius subsp. salivarius UCC118	-	-	-	-	-
MurR	1 MurR Carnobacterium sp. AT7	1 MurR Lactobacillus acidophilus NCFM	-	-	-	-	-	-	-	-	-	-	1 MurR Lactobacillus johnsonii NCC 533	-	1 MurR Lactobacillus plantarum JDM1	1 MurR Lactobacillus plantarum WCFS1	-	-	-	-	-	-	-	-	-	-	-	-	1 MurR Pediococcus pentosaceus ATCC 25745
NagR	2 NagR Carnobacterium sp. AT7	2 NagR Lactobacillus acidophilus NCFM	3 NagR Lactobacillus brevis ATCC 367	3 NagR Lactobacillus casei ATCC 334	3 NagR Lactobacillus casei BL23	2 NagR Lactobacillus crispatus ST1	2 NagR Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842	2 NagR Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	1 NagR Lactobacillus fermentum IFO 3956	2 NagR Lactobacillus gasseri ATCC 33323	2 NagR Lactobacillus helveticus DPC 4571	2 NagR Lactobacillus johnsonii FI9785	2 NagR Lactobacillus johnsonii NCC 533	3 NagR Lactobacillus paracasei subsp. paracasei 8700:2	4 NagR Lactobacillus plantarum JDM1	4 NagR Lactobacillus plantarum WCFS1	1 NagR Lactobacillus reuteri 100-23	1 NagR Lactobacillus reuteri DSM 20016	1 NagR Lactobacillus reuteri JCM 1112	2 NagR Lactobacillus rhamnosus GG	2 NagR Lactobacillus rhamnosus HN001	2 NagR Lactobacillus rhamnosus Lc 705	4 NagR Lactobacillus sakei subsp. sakei 23K	3 NagR Lactobacillus salivarius subsp. salivarius UCC118	2 NagR Leuconostoc citreum KM20	2 NagR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	1 NagR Oenococcus oeni ATCC BAA-1163	1 NagR Oenococcus oeni PSU-1	4 NagR Pediococcus pentosaceus ATCC 25745
NiaR	-	-	-	1 NiaR Lactobacillus casei ATCC 334	-	-	-	-	-	-	-	-	-	-	2 NiaR Lactobacillus plantarum JDM1	2 NiaR Lactobacillus plantarum WCFS1	-	-	-	1 NiaR Lactobacillus rhamnosus GG	1 NiaR Lactobacillus rhamnosus HN001	1 NiaR Lactobacillus rhamnosus Lc 705	-	-	-	-	-	-	2 NiaR Pediococcus pentosaceus ATCC 25745
NigR	-	-	-	-	-	-	-	-	-	1 NigR Lactobacillus gasseri ATCC 33323	-	-	1 NigR Lactobacillus johnsonii NCC 533	-	-	-	-	-	-	-	-	-	-	1 NigR Lactobacillus salivarius subsp. salivarius UCC118	-	-	-	-	-
NihR	-	-	2 NihR Lactobacillus brevis ATCC 367	-	-	-	-	-	2 NihR Lactobacillus fermentum IFO 3956	-	-	1 NihR Lactobacillus johnsonii FI9785	-	-	2 NihR Lactobacillus plantarum JDM1	2 NihR Lactobacillus plantarum WCFS1	-	-	-	-	-	-	3 NihR Lactobacillus sakei subsp. sakei 23K	-	-	-	-	-	2 NihR Pediococcus pentosaceus ATCC 25745
NrdR	2 NrdR Carnobacterium sp. AT7	4 NrdR Lactobacillus acidophilus NCFM	5 NrdR Lactobacillus brevis ATCC 367	5 NrdR Lactobacillus casei ATCC 334	5 NrdR Lactobacillus casei BL23	3 NrdR Lactobacillus crispatus ST1	3 NrdR Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842	3 NrdR Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	2 NrdR Lactobacillus fermentum IFO 3956	4 NrdR Lactobacillus gasseri ATCC 33323	4 NrdR Lactobacillus helveticus DPC 4571	3 NrdR Lactobacillus johnsonii FI9785	3 NrdR Lactobacillus johnsonii NCC 533	5 NrdR Lactobacillus paracasei subsp. paracasei 8700:2	4 NrdR Lactobacillus plantarum JDM1	4 NrdR Lactobacillus plantarum WCFS1	4 NrdR Lactobacillus reuteri 100-23	4 NrdR Lactobacillus reuteri DSM 20016	4 NrdR Lactobacillus reuteri JCM 1112	5 NrdR Lactobacillus rhamnosus GG	5 NrdR Lactobacillus rhamnosus HN001	4 NrdR Lactobacillus rhamnosus Lc 705	3 NrdR Lactobacillus sakei subsp. sakei 23K	2 NrdR Lactobacillus salivarius subsp. salivarius UCC118	-	-	-	-	4 NrdR Pediococcus pentosaceus ATCC 25745
NrtR	-	-	-	1 NrtR Lactobacillus casei ATCC 334	1 NrtR Lactobacillus casei BL23	-	1 NrtR Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842	1 NrtR Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	1 NrtR Lactobacillus fermentum IFO 3956	-	1 NrtR Lactobacillus helveticus DPC 4571	1 NrtR Lactobacillus johnsonii FI9785	-	1 NrtR Lactobacillus paracasei subsp. paracasei 8700:2	1 NrtR Lactobacillus plantarum JDM1	1 NrtR Lactobacillus plantarum WCFS1	-	1 NrtR Lactobacillus reuteri DSM 20016	1 NrtR Lactobacillus reuteri JCM 1112	1 NrtR Lactobacillus rhamnosus GG	1 NrtR Lactobacillus rhamnosus HN001	1 NrtR Lactobacillus rhamnosus Lc 705	-	-	1 NrtR Leuconostoc citreum KM20	1 NrtR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	-	-	-
OglR2	-	-	-	1 OglR2 Lactobacillus casei ATCC 334	1 OglR2 Lactobacillus casei BL23	-	-	-	-	-	-	-	-	1 OglR2 Lactobacillus paracasei subsp. paracasei 8700:2	-	-	-	-	-	-	-	1 OglR2 Lactobacillus rhamnosus Lc 705	-	-	-	-	-	-	-
PadR	-	-	2 PadR Lactobacillus brevis ATCC 367	-	-	-	-	-	-	-	-	-	-	-	2 PadR Lactobacillus plantarum JDM1	2 PadR Lactobacillus plantarum WCFS1	-	-	-	-	-	-	1 PadR Lactobacillus sakei subsp. sakei 23K	-	-	-	-	-	1 PadR Pediococcus pentosaceus ATCC 25745
PerR	-	-	6 PerR Lactobacillus brevis ATCC 367	5 PerR Lactobacillus casei ATCC 334	5 PerR Lactobacillus casei BL23	-	-	-	4 PerR Lactobacillus fermentum IFO 3956	1 PerR Lactobacillus gasseri ATCC 33323	-	-	-	5 PerR Lactobacillus paracasei subsp. paracasei 8700:2	6 PerR Lactobacillus plantarum JDM1	6 PerR Lactobacillus plantarum WCFS1	3 PerR Lactobacillus reuteri 100-23	4 PerR Lactobacillus reuteri DSM 20016	4 PerR Lactobacillus reuteri JCM 1112	5 PerR Lactobacillus rhamnosus GG	5 PerR Lactobacillus rhamnosus HN001	5 PerR Lactobacillus rhamnosus Lc 705	4 PerR Lactobacillus sakei subsp. sakei 23K	4 PerR Lactobacillus salivarius subsp. salivarius UCC118	3 PerR Leuconostoc citreum KM20	4 PerR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	-	-	2 PerR Pediococcus pentosaceus ATCC 25745
PflR	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1 PflR Lactobacillus plantarum JDM1	3 PflR Lactobacillus plantarum WCFS1	-	-	-	-	-	-	-	-	-	-	-	-	-
PurR	3 PurR Carnobacterium sp. AT7	7 PurR Lactobacillus acidophilus NCFM	4 PurR Lactobacillus brevis ATCC 367	6 PurR Lactobacillus casei ATCC 334	6 PurR Lactobacillus casei BL23	5 PurR Lactobacillus crispatus ST1	6 PurR Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842	5 PurR Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	5 PurR Lactobacillus fermentum IFO 3956	4 PurR Lactobacillus gasseri ATCC 33323	7 PurR Lactobacillus helveticus DPC 4571	4 PurR Lactobacillus johnsonii FI9785	5 PurR Lactobacillus johnsonii NCC 533	5 PurR Lactobacillus paracasei subsp. paracasei 8700:2	7 PurR Lactobacillus plantarum JDM1	7 PurR Lactobacillus plantarum WCFS1	4 PurR Lactobacillus reuteri 100-23	5 PurR Lactobacillus reuteri DSM 20016	4 PurR Lactobacillus reuteri JCM 1112	6 PurR Lactobacillus rhamnosus GG	6 PurR Lactobacillus rhamnosus HN001	6 PurR Lactobacillus rhamnosus Lc 705	6 PurR Lactobacillus sakei subsp. sakei 23K	7 PurR Lactobacillus salivarius subsp. salivarius UCC118	5 PurR Leuconostoc citreum KM20	6 PurR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	2 PurR Oenococcus oeni ATCC BAA-1163	3 PurR Oenococcus oeni PSU-1	8 PurR Pediococcus pentosaceus ATCC 25745
RbsR	-	-	3 RbsR Lactobacillus brevis ATCC 367	1 RbsR Lactobacillus casei ATCC 334	1 RbsR Lactobacillus casei BL23	-	-	-	3 RbsR Lactobacillus fermentum IFO 3956	-	-	-	-	1 RbsR Lactobacillus paracasei subsp. paracasei 8700:2	1 RbsR Lactobacillus plantarum JDM1	1 RbsR Lactobacillus plantarum WCFS1	1 RbsR Lactobacillus reuteri 100-23	1 RbsR Lactobacillus reuteri DSM 20016	1 RbsR Lactobacillus reuteri JCM 1112	1 RbsR Lactobacillus rhamnosus GG	1 RbsR Lactobacillus rhamnosus HN001	1 RbsR Lactobacillus rhamnosus Lc 705	1 RbsR Lactobacillus sakei subsp. sakei 23K	-	-	2 RbsR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	1 RbsR Oenococcus oeni ATCC BAA-1163	2 RbsR Oenococcus oeni PSU-1	1 RbsR Pediococcus pentosaceus ATCC 25745
Rex	2 Rex Carnobacterium sp. AT7	3 Rex Lactobacillus acidophilus NCFM	6 Rex Lactobacillus brevis ATCC 367	3 Rex Lactobacillus casei ATCC 334	3 Rex Lactobacillus casei BL23	2 Rex Lactobacillus crispatus ST1	2 Rex Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842	2 Rex Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	4 Rex Lactobacillus fermentum IFO 3956	2 Rex Lactobacillus gasseri ATCC 33323	2 Rex Lactobacillus helveticus DPC 4571	2 Rex Lactobacillus johnsonii FI9785	2 Rex Lactobacillus johnsonii NCC 533	3 Rex Lactobacillus paracasei subsp. paracasei 8700:2	3 Rex Lactobacillus plantarum JDM1	4 Rex Lactobacillus plantarum WCFS1	3 Rex Lactobacillus reuteri 100-23	5 Rex Lactobacillus reuteri DSM 20016	5 Rex Lactobacillus reuteri JCM 1112	3 Rex Lactobacillus rhamnosus GG	3 Rex Lactobacillus rhamnosus HN001	2 Rex Lactobacillus rhamnosus Lc 705	6 Rex Lactobacillus sakei subsp. sakei 23K	3 Rex Lactobacillus salivarius subsp. salivarius UCC118	4 Rex Leuconostoc citreum KM20	4 Rex Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	3 Rex Oenococcus oeni ATCC BAA-1163	3 Rex Oenococcus oeni PSU-1	3 Rex Pediococcus pentosaceus ATCC 25745
RpiR	-	1 RpiR Lactobacillus acidophilus NCFM	-	2 RpiR Lactobacillus casei ATCC 334	2 RpiR Lactobacillus casei BL23	1 RpiR Lactobacillus crispatus ST1	-	-	-	1 RpiR Lactobacillus gasseri ATCC 33323	1 RpiR Lactobacillus helveticus DPC 4571	1 RpiR Lactobacillus johnsonii FI9785	-	2 RpiR Lactobacillus paracasei subsp. paracasei 8700:2	-	-	-	-	-	-	-	-	-	2 RpiR Lactobacillus salivarius subsp. salivarius UCC118	-	-	-	-	-
ScrR	-	2 ScrR Lactobacillus acidophilus NCFM	-	-	-	2 ScrR Lactobacillus crispatus ST1	-	-	2 ScrR Lactobacillus fermentum IFO 3956	2 ScrR Lactobacillus gasseri ATCC 33323	-	3 ScrR Lactobacillus johnsonii FI9785	3 ScrR Lactobacillus johnsonii NCC 533	-	2 ScrR Lactobacillus plantarum JDM1	2 ScrR Lactobacillus plantarum WCFS1	-	1 ScrR Lactobacillus reuteri DSM 20016	1 ScrR Lactobacillus reuteri JCM 1112	-	-	-	2 ScrR Lactobacillus sakei subsp. sakei 23K	2 ScrR Lactobacillus salivarius subsp. salivarius UCC118	-	4 ScrR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	-	-	2 ScrR Pediococcus pentosaceus ATCC 25745
ScrR2	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2 ScrR2 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	-	-	-
SdaR	-	-	2 SdaR Lactobacillus brevis ATCC 367	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1 SdaR Lactobacillus reuteri DSM 20016	2 SdaR Lactobacillus reuteri JCM 1112	-	-	-	1 SdaR Lactobacillus sakei subsp. sakei 23K	-	-	-	-	-	-
TagR	-	-	-	2 TagR Lactobacillus casei ATCC 334	2 TagR Lactobacillus casei BL23	-	-	-	-	1 TagR Lactobacillus gasseri ATCC 33323	-	2 TagR Lactobacillus johnsonii FI9785	2 TagR Lactobacillus johnsonii NCC 533	2 TagR Lactobacillus paracasei subsp. paracasei 8700:2	-	-	-	-	-	2 TagR Lactobacillus rhamnosus GG	-	2 TagR Lactobacillus rhamnosus Lc 705	-	-	-	-	-	-	2 TagR Pediococcus pentosaceus ATCC 25745
TreR	-	2 TreR Lactobacillus acidophilus NCFM	-	1 TreR Lactobacillus casei ATCC 334	1 TreR Lactobacillus casei BL23	-	-	-	-	1 TreR Lactobacillus gasseri ATCC 33323	-	-	-	1 TreR Lactobacillus paracasei subsp. paracasei 8700:2	1 TreR Lactobacillus plantarum JDM1	1 TreR Lactobacillus plantarum WCFS1	-	-	-	1 TreR Lactobacillus rhamnosus GG	-	1 TreR Lactobacillus rhamnosus Lc 705	2 TreR Lactobacillus sakei subsp. sakei 23K	2 TreR Lactobacillus salivarius subsp. salivarius UCC118	1 TreR Leuconostoc citreum KM20	1 TreR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	-	1 TreR Oenococcus oeni PSU-1	2 TreR Pediococcus pentosaceus ATCC 25745
UxuR	-	-	3 UxuR Lactobacillus brevis ATCC 367	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
XylR	-	-	5 XylR Lactobacillus brevis ATCC 367	-	-	-	-	-	3 XylR Lactobacillus fermentum IFO 3956	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2 XylR Leuconostoc citreum KM20	2 XylR Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	-	-	2 XylR Pediococcus pentosaceus ATCC 25745
YtrA	-	-	1 YtrA Lactobacillus brevis ATCC 367	1 YtrA Lactobacillus casei ATCC 334	1 YtrA Lactobacillus casei BL23	-	1 YtrA Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842	1 YtrA Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	-	-	-	-	-	1 YtrA Lactobacillus paracasei subsp. paracasei 8700:2	1 YtrA Lactobacillus plantarum JDM1	1 YtrA Lactobacillus plantarum WCFS1	-	-	-	1 YtrA Lactobacillus rhamnosus GG	1 YtrA Lactobacillus rhamnosus HN001	1 YtrA Lactobacillus rhamnosus Lc 705	1 YtrA Lactobacillus sakei subsp. sakei 23K	-	-	1 YtrA Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	1 YtrA Oenococcus oeni ATCC BAA-1163	1 YtrA Oenococcus oeni PSU-1	-
YwzG	-	-	1 YwzG Lactobacillus brevis ATCC 367	-	-	-	-	-	-	-	-	-	-	-	1 YwzG Lactobacillus plantarum JDM1	1 YwzG Lactobacillus plantarum WCFS1	-	1 YwzG Lactobacillus reuteri DSM 20016	1 YwzG Lactobacillus reuteri JCM 1112	-	-	-	-	1 YwzG Lactobacillus salivarius subsp. salivarius UCC118	-	1 YwzG Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	-	-	1 YwzG Pediococcus pentosaceus ATCC 25745
YxeR	-	1 YxeR Lactobacillus acidophilus NCFM	1 YxeR Lactobacillus brevis ATCC 367	1 YxeR Lactobacillus casei ATCC 334	-	1 YxeR Lactobacillus crispatus ST1	-	1 YxeR Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	1 YxeR Lactobacillus fermentum IFO 3956	-	1 YxeR Lactobacillus helveticus DPC 4571	-	1 YxeR Lactobacillus johnsonii NCC 533	1 YxeR Lactobacillus paracasei subsp. paracasei 8700:2	-	-	1 YxeR Lactobacillus reuteri 100-23	-	1 YxeR Lactobacillus reuteri JCM 1112	-	-	-	-	1 YxeR Lactobacillus salivarius subsp. salivarius UCC118	1 YxeR Leuconostoc citreum KM20	-	2 YxeR Oenococcus oeni ATCC BAA-1163	2 YxeR Oenococcus oeni PSU-1	1 YxeR Pediococcus pentosaceus ATCC 25745
YybA	-	1 YybA Lactobacillus acidophilus NCFM	-	-	-	-	-	-	-	-	-	-	1 YybA Lactobacillus johnsonii NCC 533	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Zur	-	-	3 Zur Lactobacillus brevis ATCC 367	4 Zur Lactobacillus casei ATCC 334	4 Zur Lactobacillus casei BL23	-	-	-	3 Zur Lactobacillus fermentum IFO 3956	-	-	-	-	4 Zur Lactobacillus paracasei subsp. paracasei 8700:2	6 Zur Lactobacillus plantarum JDM1	6 Zur Lactobacillus plantarum WCFS1	1 Zur Lactobacillus reuteri 100-23	1 Zur Lactobacillus reuteri DSM 20016	1 Zur Lactobacillus reuteri JCM 1112	4 Zur Lactobacillus rhamnosus GG	4 Zur Lactobacillus rhamnosus HN001	4 Zur Lactobacillus rhamnosus Lc 705	1 Zur Lactobacillus sakei subsp. sakei 23K	3 Zur Lactobacillus salivarius subsp. salivarius UCC118	-	2 Zur Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	2 Zur Oenococcus oeni ATCC BAA-1163	3 Zur Oenococcus oeni PSU-1	1 Zur Pediococcus pentosaceus ATCC 25745

-- Legend --

5	Orthologous regulator is detected and five members of regulon are predicted in a target genome
-	Orthologous regulator is detected in a target genome but no potential members of regulon where identified
3	Three potential members of regulon were found, but orthologous regulator could not be detected in a target genome.
3	Neither orthologous regulator no potential members of regulon were found in a target genome

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Draft regulons reconstructed by automated conservative propagation

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --