Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Carnobacterium sp. AT7

Reference regulog properties
Source regulog: CcpA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-bisphosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Carnobacterium sp. AT7
Orthologous TF(s) CAT7_03584
Regulated genes 27
Built upon 561 sites [see more]
Predicted regulatory interactions in Carnobacterium sp. AT7
Locus tag Position Score Sequence
Position: -174
Score: 4.4
Sequence: TAGTAAGCGATTTCCT
Locus tag: CAT7_01967
CAT7_01967 -174 4.4 TAGTAAGCGATTTCCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glgB
Ortholog function: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
Lactobacillus acidophilus NCFM LBA0680 -55 4.3 AAGTAAGCGCTTTCCG
Lactobacillus casei ATCC 334 LSEI_2040 -230 4.1 TTGTAATCGCTGTTAA
-208 4.4 CAGTAAGCGGTTACAA
Lactobacillus rhamnosus GG LGG_02027 -197 4 CCGAAAGCGGTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1294 -88 4 GTGAAAGCTATTTCTT
Position: -60
Score: 4.9
Sequence: ATGTAAACGTTATCAT
Locus tag: CAT7_09255
CAT7_09255 -60 4.9 ATGTAAACGTTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Arginine deiminase (EC 3.5.3.6)
Lactobacillus fermentum IFO 3956 LAF_0300 -65 4.7 TTGAAAACGCTTGCTA
Lactobacillus reuteri JCM 1112 LAR_0435 -72 4.7 TTGACAACGTTTACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1629 -119 5 ATGAAAACGTTTTAAA
-55 4.5 GTGAAAGCGCTTGCTA
Position: -194
Score: 4.8
Sequence: ATGATAACGTTTACAT
Locus tag: CAT7_09260
CAT7_09260 -194 4.8 ATGATAACGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argR
Ortholog function: Arginine metabolism regulator ArgR
Lactobacillus fermentum IFO 3956 LAF_1823 -119 4.8 ATGAAACCGGTTTAAA
Lactobacillus reuteri JCM 1112 LAR_0436 -72 4.7 TTGACAACGTTTACAT
Position: -51
Score: 3.9
Sequence: AGGGAAGCGTTAACTA
Locus tag: CAT7_06196
CAT7_06196 -51 3.9 AGGGAAGCGTTAACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pgm
Ortholog function: D-Ribose 1,5-phosphomutase (EC 5.4.2.7)
Lactobacillus casei ATCC 334 LSEI_0949 -102 3.9 TTGAGCGCGTTTTCAA
Lactobacillus johnsonii NCC 533 LJ0862 -121 4.3 ATAAAAGCGTTTAATA
Lactobacillus plantarum WCFS1 lp_0764 -40 4.4 TTGTAAGCACTAACAA
Lactobacillus rhamnosus GG LGG_00921 -100 3.9 TTGAGCGCGTTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0446 -77 4.1 AAAAAAACGCTTTCTG
Position: -57
Score: 4.3
Sequence: ATGTTAGCGCTTTCTG
Locus tag: CAT7_10270
CAT7_10270 -57 4.3 ATGTTAGCGCTTTCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: araB
Ortholog function: Ribulokinase (EC 2.7.1.16)
Lactobacillus brevis ATCC 367 LVIS_1742 -79 4.4 TTGAAAGGGCTTTCGA
Lactobacillus fermentum IFO 3956 LAF_1558 -111 4.6 ATGAAAACGGTTTATT
Lactobacillus plantarum WCFS1 lp_3556 -63 4.6 TTGAAAGGGCTTTCTA
Lactobacillus reuteri JCM 1112 LAR_0468 -63 4.7 ATGAAAGCGCGTTCAT
Lactobacillus sakei subsp. sakei 23K LSA1859 -78 4.7 TTGAAACCGTTTTATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0854 -104 5 TTGTAAGCGTTTCCAA
Oenococcus oeni PSU-1 OEOE_0227 -218 4.3 ATTTAAACGGTTTTAT
-116 4.4 GTGTAAGCACTTACAA
Pediococcus pentosaceus ATCC 25745 PEPE_0163 -48 4.9 ATGAATACGCTTTCAA
Position: -58
Score: 4.8
Sequence: TTGAAAGCGTTATAAT
Locus tag: CAT7_10670
CAT7_10670 -58 4.8 TTGAAAGCGTTATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yghZ
Ortholog function: Predicted oxidoreductase, aryl-alcohol dehydrogenase related
Lactobacillus plantarum WCFS1 lp_3489 -49 4.6 ATGAAAGCGGTAACTT
Lactobacillus sakei subsp. sakei 23K LSA0260 -45 4.5 ATGTAACCGATTGCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1315 -77 4.8 AGGTAAGCGTTTACAT
Pediococcus pentosaceus ATCC 25745 PEPE_0112 -45 4.7 ATGAAAGCGGTATCTT
Position: -115
Score: 4.4
Sequence: TTGAAAGCGTGTTAAA
Locus tag: CAT7_07728
CAT7_07728 -115 4.4 TTGAAAGCGTGTTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhA
Ortholog function: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Lactobacillus brevis ATCC 367 LVIS_1410 -117 4.4 ATGAAAGGGCTTGCAA
Lactobacillus casei ATCC 334 LSEI_1305 -111 4.2 AATAAAACGCTTGCAA
-68 4.1 TTGTAAAGATTTTCAT
Lactobacillus fermentum IFO 3956 LAF_1140 -244 4.2 ATGTAACGGCTTTCTT
-169 4.5 ATGTAAGCGGTAACTT
Lactobacillus plantarum WCFS1 lp_2154 -118 4.1 TTGGAAGGGCTTGCAA
-67 4.5 ATGAAAACGATTACGA
Lactobacillus reuteri JCM 1112 LAR_0608 -90 4.7 ATGAAAGCGCTTGTAT
-40 4.3 AAGCAATCGCTTACAT
Lactobacillus rhamnosus GG LGG_01320 -111 4.2 AATAAAACGCTTGCAA
Lactobacillus sakei subsp. sakei 23K LSA1085 -115 4 TGTAAAACGCTTGCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0153 -216 4 GTGATAACGATAACAA
-67 4.5 TTGTAAGCGTTATATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0737 -31 4.9 GTGTAAGCGGTTACAA
Oenococcus oeni PSU-1 OEOE_0328 -53 5.1 TTGAAAGCGCTTACAG
Pediococcus pentosaceus ATCC 25745 PEPE_1773 -107 4 TTTAAAACATTTTAAA
-40 4.8 TAGAAAGCGCTTCCAT
Position: -70
Score: 4.6
Sequence: TTGAAAGCGGAAACAA
Locus tag: CAT7_09790
CAT7_09790 -70 4.6 TTGAAAGCGGAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: Mannitol-specific PTS system, IIBC component (EC 2.7.1.69)
Lactobacillus casei ATCC 334 LSEI_2888 -65 4.5 TTGTCAGCGATTACAT
Lactobacillus plantarum WCFS1 lp_0230 -63 4.8 TTGAAACCGCTTACCA
Lactobacillus rhamnosus GG LGG_02912 -65 4.5 TTGTCAGCGATTACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1620 -56 4.2 CAGTAAACGTTATCAT
Position: -64
Score: 4.2
Sequence: AGAAAAACGGTTACAA
Position: -38
Score: 4.4
Sequence: AAGAAATCGCTTGCAA
Locus tag: CAT7_00845
CAT7_00845 -64 4.2 AGAAAAACGGTTACAA
-38 4.4 AAGAAATCGCTTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpK
Ortholog function: Glycerol kinase (EC 2.7.1.30)
Lactobacillus brevis ATCC 367 LVIS_0238 -46 4.3 TTGGAACCGGTTTCGT
Lactobacillus sakei subsp. sakei 23K LSA0649 -43 4.3 AAGGAAACGTTTTCCA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0110 -149 4.4 GAATAAGCGTTTTCAT
-43 4.8 AAGAAAACGTTTTCTT
Position: -114
Score: 4.1
Sequence: TAGAAAAGGCATTCAT
Locus tag: CAT7_08615
CAT7_08615 -114 4.1 TAGAAAAGGCATTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: guaA
Ortholog function: GMP synthase (EC 6.3.5.2)
Lactobacillus johnsonii NCC 533 LJ0229 -120 4 ATTAAAGCGCTATTTT
Lactobacillus plantarum WCFS1 lp_0914 -61 4.2 TTGATAAGGGTTTCAT
Lactobacillus sakei subsp. sakei 23K LSA0139 -44 3.8 ATGTAACCGTTTAGCA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1537 -75 4.2 TTGAAAGCGTAATATT
Pediococcus pentosaceus ATCC 25745 PEPE_0412 -103 4.3 TTGATAGCCTTTTCAT
Position: -33
Score: 4.8
Sequence: TTGTAAGCGCATTCTA
Locus tag: CAT7_04319
CAT7_04319 -33 4.8 TTGTAAGCGCATTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpK
Ortholog function: Glycerol kinase (EC 2.7.1.30)
Lactobacillus brevis ATCC 367 LVIS_0238 -46 4.3 TTGGAACCGGTTTCGT
Lactobacillus sakei subsp. sakei 23K LSA0649 -43 4.3 AAGGAAACGTTTTCCA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0110 -149 4.4 GAATAAGCGTTTTCAT
-43 4.8 AAGAAAACGTTTTCTT
Position: -90
Score: 4
Sequence: AATAAAGCGATTAAAA
Position: -70
Score: 4.4
Sequence: ATGAAATCGGTTTATA
Locus tag: CAT7_02594
CAT7_02594 -90 4 AATAAAGCGATTAAAA
-70 4.4 ATGAAATCGGTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruR
Ortholog function: Fructose utilization transcriptional regulator FruR, DeoR family
Lactobacillus acidophilus NCFM LBA1779 -37 4.2 GAGAAAGCGAATACAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1889 -164 4 GAGAAAGCCTTTACAA
Lactobacillus helveticus DPC 4571 lhv_1846 12 4.3 GAGAAAGCGGATACAA
Lactobacillus johnsonii NCC 533 LJ0570 -40 4.1 CTGAAAGCGTTTATCA
Lactobacillus plantarum WCFS1 lp_2095 -6 4.3 TTGAAAGTGCTTACAG
Lactobacillus sakei subsp. sakei 23K LSA1048 -130 4 ATGAAAACCTTTACAC
-40 4.3 TTGTAAACGATGACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1166 -6 4.3 ATGAAAGTGCTTACAG
Position: -64
Score: 4.4
Sequence: TTGTAATCGGATACAA
Locus tag: CAT7_00505
CAT7_00505 -64 4.4 TTGTAATCGGATACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: Mannitol-specific PTS system, IIBC component (EC 2.7.1.69)
Lactobacillus casei ATCC 334 LSEI_2888 -65 4.5 TTGTCAGCGATTACAT
Lactobacillus plantarum WCFS1 lp_0230 -63 4.8 TTGAAACCGCTTACCA
Lactobacillus rhamnosus GG LGG_02912 -65 4.5 TTGTCAGCGATTACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1620 -56 4.2 CAGTAAACGTTATCAT
Position: -67
Score: 4.2
Sequence: ATGGTAACGTTTGCAA
Locus tag: CAT7_00370
CAT7_00370 -67 4.2 ATGGTAACGTTTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malX
Ortholog function: Maltose/maltodextrin ABC transporter, substrate-binding protein
Lactobacillus plantarum WCFS1 lp_0175 -101 4 CTGTTAACGTTAACAT
Position: -70
Score: 4.4
Sequence: TTGTAAGTGCTTTCTA
Locus tag: CAT7_00380
CAT7_00380 -70 4.4 TTGTAAGTGCTTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: agl
Ortholog function: Oligo-1,6-glucosidase (EC 3.2.1.10)
Lactobacillus acidophilus NCFM LBA1872 -49 5 TTGAAAACGGTTTCTT
Lactobacillus casei ATCC 334 LSEI_0980 -80 4.4 TTGATAACGGTAACAA
Lactobacillus helveticus DPC 4571 lhv_2002 -34 4.3 TTGAAAACGGTTTCCC
Lactobacillus johnsonii NCC 533 LJ0211 -53 5 TTGTAAGCGCTTATAA
Position: -148
Score: 4
Sequence: ATGCAAGCGTTTCATT
Locus tag: CAT7_03589
CAT7_03589 -148 4 ATGCAAGCGTTTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepQ
Ortholog function: Xaa-Pro dipeptidase (EC 3.4.13.9)
Lactobacillus acidophilus NCFM LBA0430 -85 4.6 TTGCAAACGTTTACAG
Lactobacillus brevis ATCC 367 LVIS_1204 -103 4.9 TTGAAAACGTTTTCGA
Lactobacillus casei ATCC 334 LSEI_0808 -229 4.2 ATGCAAGCGTTTTACT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1474 -89 4 GTGCAATCGCTTACAG
Lactobacillus helveticus DPC 4571 lhv_0456 -86 4.6 GTGCAAACGTTTACAT
Lactobacillus johnsonii NCC 533 LJ0490 -85 4.2 TTGCAACCGTTTACGA
Lactobacillus plantarum WCFS1 lp_2258 -158 5.2 TTGAAATCGCTTTCAT
Lactobacillus sakei subsp. sakei 23K LSA0414 -120 4.1 ATGCAAGCGGTTTACA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0419 -125 4 TTGCAAGCGTTTCATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0543 -124 4.9 TTGCAAACGCTTACAA
-102 4.2 TTATAAGTGTTTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1251 -109 4.6 ATGAATACGTTATCAA
Position: -46
Score: 3.7
Sequence: AAGATAGCTTTTTTAT
Locus tag: CAT7_05579
CAT7_05579 -46 3.7 AAGATAGCTTTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pgi
Ortholog function: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Lactobacillus acidophilus NCFM LBA0752 -90 4.3 GTGAATGCGCTTATAA
Lactobacillus casei ATCC 334 LSEI_1126 -62 4 ATGAAACCACTCTCAT
Lactobacillus fermentum IFO 3956 LAF_1686 -63 4.4 GAGTTAGCGCTTTCAT
Lactobacillus fermentum IFO 3956 LAF_0411 -66 4.2 ATGGAAACGTTATCGT
Lactobacillus helveticus DPC 4571 lhv_0795 -14 4 TAGGAAGCGGATTTAT
Lactobacillus plantarum WCFS1 lp_2502 -77 3.8 GAGGAAGCGCTTTTCA
Lactobacillus reuteri JCM 1112 LAR_0415 -69 4.4 TTGAAACCGACTTCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0355 -37 5 TTGTAACCGATTTCAT
Oenococcus oeni PSU-1 OEOE_0636 -118 3.9 TTGGAAGCTATTCCAA
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