Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of ArgR regulog to Lactobacillus sakei subsp. sakei 23K

Reference regulog properties
Source regulog: ArgR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor, activator
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus sakei subsp. sakei 23K
Orthologous TF(s) LSA0681, LSA0615
Regulated genes 3
Built upon 27 sites [see more]
Predicted regulatory interactions in Lactobacillus sakei subsp. sakei 23K
Locus tag Position Score Sequence
Position: 20
Score: 3.2
Sequence: AGTTAAAAAATATGACGA
Locus tag: LSA1056
LSA1056 20 3.2 AGTTAAAAAATATGACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: artM
Ortholog function: Arginine ABC transporter, ATP-binding protein
Lactobacillus brevis ATCC 367 LVIS_1201 -161 4.6 AATGTATAAATTTTTATA
-96 4.9 AGTGTATAAAAATAGATA
Lactobacillus casei ATCC 334 LSEI_1345 -56 4.2 ATTGCATAAAAATCAATT
Lactobacillus fermentum IFO 3956 LAF_0624 -63 3.6 CTTGCATAATAATTCGTT
Lactobacillus plantarum WCFS1 lp_2110 -17 3.8 CTTGCATAAATAATCATA
Lactobacillus reuteri JCM 1112 LAR_0697 -253 4.7 ATTGCATAAATAAACATT
Lactobacillus rhamnosus GG LGG_01357 -56 4.3 ATTGCATAAAAATTGAAT
Lactobacillus sakei subsp. sakei 23K LSA1056 -55 4.5 ATTGCATAAATATTTATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1540 -162 3.5 GTTACATAAATATATTTT
-82 4.3 CTTGCATAAATAAACAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0629 -59 3 GATGCATATAAATTATAA
Pediococcus pentosaceus ATCC 25745 PEPE_1136 -94 5.2 AATGTATAAAAATTCATA
Position: -70
Score: 4.3
Sequence: AATTTATAAATAAATATT
Position: -66
Score: 3.9
Sequence: TATAAATAAATATTGCAT
Position: -55
Score: 4.5
Sequence: ATTGCATAAATATTTATA
Locus tag: LSA1057
LSA1057 -70 4.3 AATTTATAAATAAATATT
-66 3.9 TATAAATAAATATTGCAT
-55 4.5 ATTGCATAAATATTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: artPQ
Ortholog function: Arginine ABC transporter, substrate-binding and permease protein
Lactobacillus brevis ATCC 367 LVIS_1200 -161 4.6 AATGTATAAATTTTTATA
-96 4.9 AGTGTATAAAAATAGATA
Lactobacillus casei ATCC 334 LSEI_2810 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus casei ATCC 334 LSEI_1344 -56 4.2 ATTGCATAAAAATCAATT
Lactobacillus plantarum WCFS1 lp_2111 -17 3.8 CTTGCATAAATAATCATA
Lactobacillus reuteri JCM 1112 LAR_0698 -253 4.7 ATTGCATAAATAAACATT
Lactobacillus rhamnosus GG LGG_02816 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus rhamnosus GG LGG_01356 -56 4.3 ATTGCATAAAAATTGAAT
Lactobacillus sakei subsp. sakei 23K LSA1057 -55 4.5 ATTGCATAAATATTTATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1541 -162 3.5 GTTACATAAATATATTTT
-82 4.3 CTTGCATAAATAAACAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0655 -62 5.3 ATTGTATAAAAATTCAAA
Pediococcus pentosaceus ATCC 25745 PEPE_1137 -94 5.2 AATGTATAAAAATTCATA