Statistics of regulated genes

Genome	Genes	Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367	2	1
Lactobacillus casei ATCC 334	5	2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956	9	4
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1	11	4
Lactobacillus reuteri JCM 1112	6	3
Lactobacillus rhamnosus GG	5	2
Lactobacillus sakei subsp. sakei 23K	2	1
Lactobacillus salivarius subsp. salivarius UCC118	4	2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	9	4
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745	2	1

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes																Function
CRON 1.
artPQ	Lactobacillus acidophilus NCFM Gene: LBA0134: Arginine ABC transporter, substrate-binding and permease protein	* Lactobacillus brevis ATCC 367 Site: position = -161 score = 4.59067 sequence = AATGTATAAATTTTTATA Site: position = -96 score = 4.88529 sequence = AGTGTATAAAAATAGATA Gene: LVIS_1200: Arginine ABC transporter, substrate-binding and permease protein	* Lactobacillus casei ATCC 334 Site: position = -56 score = 4.15655 sequence = ATTGCATAAAAATCAATT Gene: LSEI_1344: Arginine ABC transporter, substrate-binding and permease protein	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571 Gene: lhv_0140: Arginine ABC transporter, substrate-binding and permease protein	Lactobacillus johnsonii NCC 533 Gene: LJ0786: Arginine ABC transporter, substrate-binding and permease protein	* Lactobacillus plantarum WCFS1 Site: position = -17 score = 3.7763 sequence = CTTGCATAAATAATCATA Gene: lp_2111: Arginine ABC transporter, substrate-binding and permease protein	* Lactobacillus reuteri JCM 1112 Site: position = -253 score = 4.69651 sequence = ATTGCATAAATAAACATT Gene: LAR_0698: Arginine ABC transporter, substrate-binding and permease protein	* Lactobacillus rhamnosus GG Site: position = -56 score = 4.34671 sequence = ATTGCATAAAAATTGAAT Gene: LGG_01356: Arginine ABC transporter, substrate-binding and permease protein	* Lactobacillus sakei subsp. sakei 23K Site: position = -55 score = 4.51711 sequence = ATTGCATAAATATTTATA Gene: LSA1057: Arginine ABC transporter, substrate-binding and permease protein	* Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -162 score = 3.53336 sequence = GTTACATAAATATATTTT Site: position = -82 score = 4.27988 sequence = CTTGCATAAATAAACAAT Gene: LSL_1541: Arginine ABC transporter, substrate-binding and permease protein	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	* Pediococcus pentosaceus ATCC 25745 Site: position = -94 score = 5.24797 sequence = AATGTATAAAAATTCATA Gene: PEPE_1137: Arginine ABC transporter, substrate-binding and permease protein	Arginine ABC transporter, substrate-binding and permease protein
artM	Lactobacillus acidophilus NCFM Gene: LBA0135: Arginine ABC transporter, ATP-binding protein	Lactobacillus brevis ATCC 367 Gene: LVIS_1201: Arginine ABC transporter, ATP-binding protein	Lactobacillus casei ATCC 334 Gene: LSEI_1345: Arginine ABC transporter, ATP-binding protein	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_1213: Arginine ABC transporter, ATP-binding protein	* Lactobacillus fermentum IFO 3956 Site: position = -63 score = 3.57287 sequence = CTTGCATAATAATTCGTT Gene: LAF_0624: Arginine ABC transporter, ATP-binding protein	Lactobacillus helveticus DPC 4571 Gene: lhv_0141: Arginine ABC transporter, ATP-binding protein	Lactobacillus johnsonii NCC 533 Gene: LJ0787: Arginine ABC transporter, ATP-binding protein	Lactobacillus plantarum WCFS1 Gene: lp_2110: Arginine ABC transporter, ATP-binding protein	Lactobacillus reuteri JCM 1112 Gene: LAR_0697: Arginine ABC transporter, ATP-binding protein	Lactobacillus rhamnosus GG Gene: LGG_01357: Arginine ABC transporter, ATP-binding protein	Lactobacillus sakei subsp. sakei 23K Gene: LSA1056: Arginine ABC transporter, ATP-binding protein	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_1540: Arginine ABC transporter, ATP-binding protein	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -59 score = 3.00949 sequence = GATGCATATAAATTATAA Gene: LEUM_0629: Arginine ABC transporter, ATP-binding protein	Oenococcus oeni PSU-1 Gene: OEOE_1427: Arginine ABC transporter, ATP-binding protein	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1136: Arginine ABC transporter, ATP-binding protein	Arginine ABC transporter, ATP-binding protein
CRON 2.
argC	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	* Lactobacillus fermentum IFO 3956 Site: position = -220 score = 4.91293 sequence = TGTGTATAAATATTTAGT Gene: LAF_0726: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	*2 Lactobacillus plantarum WCFS1 Site: position = -117 score = 4.52851 sequence = AATGAATATTTTTTCAAT Gene: lp_0528: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) Gene: lp_0487: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -71 score = 3.44278 sequence = TTTGCATATTTATTGTAT Gene: LEUM_0060: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
argJ	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956 Gene: LAF_0725: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_0529: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0059: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1)
argB	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956 Gene: LAF_0724: Acetylglutamate kinase (EC 2.7.2.8)	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_0530: Acetylglutamate kinase (EC 2.7.2.8)	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0058: Acetylglutamate kinase (EC 2.7.2.8)	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Acetylglutamate kinase (EC 2.7.2.8)
argD	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956 Gene: LAF_0723: Acetylornithine aminotransferase (EC 2.6.1.11)	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_0531: Acetylornithine aminotransferase (EC 2.6.1.11)	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0057: Acetylornithine aminotransferase (EC 2.6.1.11)	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Acetylornithine aminotransferase (EC 2.6.1.11)
argF	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_0532: Ornithine carbamoyltransferase (EC 2.1.3.3)	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_1457: Ornithine carbamoyltransferase (EC 2.1.3.3)	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Ornithine carbamoyltransferase (EC 2.1.3.3)
artP2	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	* Lactobacillus casei ATCC 334 Site: position = -46 score = 4.4385 sequence = AATGAGTATATATTCAAT Gene: LSEI_2810: Arginine ABC transporter, substrate-binding and permease protein	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	* Lactobacillus rhamnosus GG Site: position = -46 score = 4.4385 sequence = AATGAGTATATATTCAAT Gene: LGG_02816: Arginine ABC transporter, substrate-binding and permease protein	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -62 score = 5.3321 sequence = ATTGTATAAAAATTCAAA Gene: LEUM_0655: Arginine ABC transporter, substrate-binding and permease protein	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Arginine ABC transporter, substrate-binding and permease protein
argG	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334 Gene: LSEI_2811: Argininosuccinate synthase (EC 6.3.4.5)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	* Lactobacillus fermentum IFO 3956 Site: position = -136 score = 2.25886 sequence = CTTGCATTTTTATTTGAT Gene: LAF_1625: Argininosuccinate synthase (EC 6.3.4.5)	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	* Lactobacillus plantarum WCFS1 Site: position = -139 score = 4.08651 sequence = TCTGCATAAAAATTCTAT Gene: lp_0775: Argininosuccinate synthase (EC 6.3.4.5)	* Lactobacillus reuteri JCM 1112 Site: position = -164 score = 4.74928 sequence = ATTAAATAATTATTCTAT Gene: LAR_0702: Argininosuccinate synthase (EC 6.3.4.5)	Lactobacillus rhamnosus GG Gene: LGG_02817: Argininosuccinate synthase (EC 6.3.4.5)	Lactobacillus sakei subsp. sakei 23K	* Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -47 score = 3.53759 sequence = AATGAATAGATTATGAAT Gene: LSL_0306: Argininosuccinate synthase (EC 6.3.4.5)	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -73 score = 3.75835 sequence = ATTGCATATTTAATCAAA Gene: LEUM_1459: Argininosuccinate synthase (EC 6.3.4.5)	Oenococcus oeni PSU-1 Gene: OEOE_0939: Argininosuccinate synthase (EC 6.3.4.5)	Pediococcus pentosaceus ATCC 25745	Argininosuccinate synthase (EC 6.3.4.5)
argH	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334 Gene: LSEI_2812: Argininosuccinate lyase (EC 4.3.2.1)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956 Gene: LAF_1624: Argininosuccinate lyase (EC 4.3.2.1)	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_0776: Argininosuccinate lyase (EC 4.3.2.1)	Lactobacillus reuteri JCM 1112 Gene: LAR_0703: Argininosuccinate lyase (EC 4.3.2.1)	Lactobacillus rhamnosus GG Gene: LGG_02818: Argininosuccinate lyase (EC 4.3.2.1)	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_0305: Argininosuccinate lyase (EC 4.3.2.1)	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_1458: Argininosuccinate lyase (EC 4.3.2.1)	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Argininosuccinate lyase (EC 4.3.2.1)
CRON 3.
carA	2 Lactobacillus acidophilus NCFM Gene: LBA1380: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) Gene: LBA1150: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)	Lactobacillus brevis ATCC 367 Gene: LVIS_0830: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)	Lactobacillus casei ATCC 334 Gene: LSEI_1453: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)	2 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_0931: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) Gene: LBUL_1951: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)	*3 Lactobacillus fermentum IFO 3956 Gene: LAF_1203: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) Gene: LAF_1162: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) Site: position = -120 score = 3.29055 sequence = CGTTCATAAATAACCAAT Gene: LAF_0727: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)	2 Lactobacillus helveticus DPC 4571 Gene: lhv_1444: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) Gene: lhv_1257: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)	2 Lactobacillus johnsonii NCC 533 Gene: LJ1185: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) Gene: LJ1277: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)	*2 Lactobacillus plantarum WCFS1 Site: position = -169 score = 4.87381 sequence = ATTGAAAAAATATTCATT Gene: lp_0527: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) Gene: lp_2701: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)	*2 Lactobacillus reuteri JCM 1112 Site: position = -136 score = 3.63888 sequence = CATACATATATATTCAAT Site: position = -261 score = 4.73706 sequence = TTTGCATAAAAATTCATT Gene: LAR_0081: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) Gene: LAR_0876: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)	Lactobacillus rhamnosus GG Gene: LGG_01457: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)	Lactobacillus sakei subsp. sakei 23K Gene: LSA0954: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_0192: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)	2 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_1371: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) Gene: LEUM_1208: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)	Oenococcus oeni PSU-1 Gene: OEOE_0260: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_0315: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)	Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)
carB	2 Lactobacillus acidophilus NCFM Gene: LBA1379: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) Gene: LBA1149: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)	Lactobacillus brevis ATCC 367 Gene: LVIS_0829: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)	Lactobacillus casei ATCC 334 Gene: LSEI_1452: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)	2 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_0932: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) Gene: LBUL_1950: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)	3 Lactobacillus fermentum IFO 3956 Gene: LAF_1202: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) Gene: LAF_1161: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) Gene: LAF_0728: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)	2 Lactobacillus helveticus DPC 4571 Gene: lhv_1443: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) Gene: lhv_1256: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)	2 Lactobacillus johnsonii NCC 533 Gene: LJ1184: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) Gene: LJ1276: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)	2 Lactobacillus plantarum WCFS1 Gene: lp_0526: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) Gene: lp_2700: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)	2 Lactobacillus reuteri JCM 1112 Gene: LAR_0080: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) Gene: LAR_0877: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)	Lactobacillus rhamnosus GG Gene: LGG_01456: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)	Lactobacillus sakei subsp. sakei 23K Gene: LSA0955: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_0193: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)	2 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_1370: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) Gene: LEUM_1207: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)	Oenococcus oeni PSU-1 Gene: OEOE_0261: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_0316: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)	Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)

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