Propagation of NrdR regulog to Lactobacillus reuteri JCM 1112
| Source regulog: | NrdR - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus reuteri JCM 1112 |
| Orthologous TF(s) | LAR_1178 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -115
Score: 5.6 Sequence: GTACTATATATTGTGT
Locus tag: LAR_0313
|
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| LAR_0313 | -115 | 5.6 | GTACTATATATTGTGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdH | ||||
| Ortholog function: Glutaredoxin-like protein NrdH | ||||
| Lactobacillus reuteri JCM 1112 | LAR_0313 | -115 | 5.6 | GTACTATATATTGTGT |
|
Position: -56
Score: 5 Sequence: CCACAATATTTTGTAG
Locus tag: LAR_1221
|
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| LAR_1221 | -56 | 5 | CCACAATATTTTGTAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dgk2 | ||||
| Ortholog function: Deoxyadenosine kinase (EC 2.7.1.76) / Deoxyguanosine kinase (EC 2.7.1.113) | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1520 | -41 | 3.6 | GTACACTATATCTTGT |
| -39 | 5.7 | ACACTATATCTTGTAT | ||
| Lactobacillus plantarum WCFS1 | lp_1329 | -72 | 3.9 | AAAGTCTATATGGTAT |
| -40 | 5.1 | ATACAATATATTGTGC | ||
| Lactobacillus reuteri JCM 1112 | LAR_1221 | -88 | 4.4 | CCACCAAATATTGTAA |
| -56 | 5 | CCACAATATTTTGTAG | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0650 | -83 | 5.2 | ATACAATATGTTGTGG |
|
Position: -92
Score: 5.3 Sequence: CCACAACATATAGTGT
Locus tag: LAR_1249
|
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| LAR_1249 | -92 | 5.3 | CCACAACATATAGTGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdD | ||||
| Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) | ||||
| Lactobacillus acidophilus NCFM | LBA0160 | -58 | 4.5 | ATACAAGATGTTGTGC |
| Lactobacillus casei ATCC 334 | LSEI_0131 | -133 | 5 | ACACACTATATAGTGT |
| -131 | 5.5 | ACACTATATAGTGTAT | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_0185 | -173 | 5.3 | CCACAATATCTGGTAT |
| -131 | 4.6 | AAACAAGATGTAGTGG | ||
| Lactobacillus fermentum IFO 3956 | LAF_1376 | -99 | 4.7 | CCACAAGATCTTGTAA |
| -68 | 5.3 | AAACTATATGTTGTGT | ||
| Lactobacillus helveticus DPC 4571 | lhv_0169 | -56 | 5.1 | ATACAAGATGTTGTAT |
| Lactobacillus johnsonii NCC 533 | LJ0137 | -63 | 4.6 | CTACAATATCATGTAG |
| Lactobacillus plantarum WCFS1 | lp_2932 | -80 | 5.5 | CTACTATATATAGTAT |
| -49 | 4.4 | GCACTATCAATTGTAT | ||
| Lactobacillus reuteri JCM 1112 | LAR_1249 | -92 | 5.3 | CCACAACATATAGTGT |
| Lactobacillus rhamnosus GG | LGG_00138 | -131 | 5.5 | CCACTATATAGTGTAT |
| Lactobacillus sakei subsp. sakei 23K | LSA1459 | -75 | 5.1 | ACACTATATATAGTTG |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1332 | -108 | 5.5 | ATACTATATATAGTGT |
| -76 | 5.9 | ACACTATATATTGTAT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0484 | -133 | 5.7 | ATACTATATATTGTAT |
|
Position: -72
Score: 5.6 Sequence: CCACAATATCTTGTGT
Position: -30
Score: 4.9 Sequence: GCACAACATATAGTAG
Locus tag: LAR_1670
|
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| LAR_1670 | -72 | 5.6 | CCACAATATCTTGTGT | |
| -30 | 4.9 | GCACAACATATAGTAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pnuN | ||||
| Ortholog function: NrdR-regulated deoxyribonucleotide transporter, PnuC-like | ||||
| Lactobacillus acidophilus NCFM | LBA1653 | -53 | 5.5 | GCACAATATATAGTAT |
| Lactobacillus brevis ATCC 367 | LVIS_0311 | -82 | 5.8 | CCACAATATATTGTGT |
| -41 | 3.5 | GTACTAAATATAGAAA | ||
| Lactobacillus casei ATCC 334 | LSEI_1204 | -107 | 4.9 | CACCAATATATTGTAT |
| -105 | 3.6 | CCAATATATTGTATAT | ||
| Lactobacillus helveticus DPC 4571 | lhv_1757 | -172 | 3.7 | ACACAACATATAGATA |
| -140 | 4.5 | GCACAATATTTTGTAA | ||
| -50 | 4.9 | ACACAAAATGTTGTAT | ||
| Lactobacillus johnsonii NCC 533 | LJ0643 | -46 | 5.7 | GCACAATATATTGTGT |
| Lactobacillus plantarum WCFS1 | lp_0259 | -108 | 5.7 | ATACAATATATTGTGT |
| -78 | 4.8 | ACACTACATGTAGTAG | ||
| Lactobacillus reuteri JCM 1112 | LAR_1670 | -72 | 5.6 | CCACAATATCTTGTGT |
| -30 | 4.9 | GCACAACATATAGTAG | ||
| Lactobacillus rhamnosus GG | LGG_01221 | -139 | 3.9 | TTAGTACATGTTGTGG |
| -107 | 4.9 | CACCAATATATTGTAT | ||
| Lactobacillus sakei subsp. sakei 23K | LSA1189 | -155 | 4.2 | CTACCATATTTTGAAT |
| -105 | 5.4 | GTACTATATATAGTGT | ||