Profile of regulator NrdR in Lactobacillaceae
Properties
| Regulator family: |
NrdR |
| Regulation mode: |
repressor |
| Biological process: |
Deoxyribonucleotide biosynthesis |
| Effector: |
Deoxyribonucleotides |
| Regulog: |
NrdR - Lactobacillaceae |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Lactobacillus acidophilus NCFM
|
|
LBA0041 |
nrdJ |
-52 |
3.5 |
ATCATACATAATGTGT |
|
LBA1653 |
pnuN |
-53 |
5.5 |
GCACAATATATAGTAT |
|
LBA0160 |
nrdD |
-58 |
4.5 |
ATACAAGATGTTGTGC |
|
LBA1949 |
dgk1 |
-53 |
4 |
CTACCAGATATTGACT |
|
LBA1949 |
dgk1 |
-23 |
4.7 |
ACCCTATATATGGTAG |
|
LBA0041 |
nrdJ |
-83 |
5.1 |
GTACAAGATATTGTGG |
|
Lactobacillus brevis ATCC 367
|
|
LVIS_1520 |
dgk2 |
-41 |
3.6 |
GTACACTATATCTTGT |
|
LVIS_1520 |
dgk2 |
-39 |
5.7 |
ACACTATATCTTGTAT |
|
LVIS_0597 |
nrdH |
-94 |
4.6 |
CTACCAAATATGGTGT |
|
LVIS_1711 |
dgk1 |
-100 |
4.8 |
CCACGATATATTGTCT |
|
LVIS_1711 |
dgk1 |
-68 |
4.9 |
GTACAATATGTGGTGT |
|
LVIS_0597 |
nrdH |
-126 |
4.5 |
ACACCATATTTGGTAG |
|
LVIS_0311 |
pnuN |
-41 |
3.5 |
GTACTAAATATAGAAA |
|
LVIS_0311 |
pnuN |
-82 |
5.8 |
CCACAATATATTGTGT |
|
LVIS_1898 |
nrdJ |
-45 |
4.6 |
CTACCATATATAGCAT |
|
LVIS_1898 |
nrdJ |
-77 |
5.3 |
TAACTATATATTGTAT |
|
Lactobacillus casei ATCC 334
|
|
LSEI_1742 |
nrdG |
-113 |
4.3 |
ATACTACATCTTGGGG |
|
LSEI_0131 |
nrdD |
-131 |
5.5 |
ACACTATATAGTGTAT |
|
LSEI_1204 |
pnuN |
-105 |
3.6 |
CCAATATATTGTATAT |
|
LSEI_1204 |
pnuN |
-107 |
4.9 |
CACCAATATATTGTAT |
|
LSEI_0131 |
nrdD |
-133 |
5 |
ACACACTATATAGTGT |
|
LSEI_1467 |
nrdH |
-85 |
4.6 |
CCCCAAGATATGGTAT |
|
LSEI_2287 |
nrdJ |
-31 |
5.3 |
ATACCATATCTTGTAT |
|
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
|
|
LBUL_0185 |
nrdD |
-173 |
5.3 |
CCACAATATCTGGTAT |
|
LBUL_0185 |
nrdD |
-131 |
4.6 |
AAACAAGATGTAGTGG |
|
LBUL_2017 |
dgk1 |
-34 |
3.6 |
AACGTAGATCTAGTAT |
|
LBUL_2017 |
dgk1 |
-64 |
4.2 |
GCACTATATCTTGCAA |
|
LBUL_0079 |
nrdJ |
-138 |
3.7 |
ACACAGTTTCTCGTGT |
|
LBUL_0079 |
nrdJ |
-107 |
5.4 |
ACACTACATCTTGTGT |
|
Lactobacillus fermentum IFO 3956
|
|
LAF_1675 |
nrdI |
-30 |
4.7 |
CCACAACATCTTGTGA |
|
LAF_1376 |
nrdD |
-99 |
4.7 |
CCACAAGATCTTGTAA |
|
LAF_1376 |
nrdD |
-68 |
5.3 |
AAACTATATGTTGTGT |
|
LAF_0281 |
nrdH |
-109 |
5.4 |
CCACCATATCTTGTGT |
|
LAF_0281 |
nrdH |
-78 |
4.4 |
GCACGAGATATGGTGG |
|
Lactobacillus helveticus DPC 4571
|
|
lhv_2079 |
dgk1 |
-28 |
5 |
CCACAATATCTCGTAT |
|
lhv_2079 |
dgk1 |
-45 |
3.8 |
AAAAAAGAGCTTGTGT |
|
lhv_0169 |
nrdD |
-56 |
5.1 |
ATACAAGATGTTGTAT |
|
lhv_1757 |
pnuN |
-172 |
3.7 |
ACACAACATATAGATA |
|
lhv_1757 |
pnuN |
-140 |
4.5 |
GCACAATATTTTGTAA |
|
lhv_1757 |
pnuN |
-50 |
4.9 |
ACACAAAATGTTGTAT |
|
lhv_2079 |
dgk1 |
2 |
4.4 |
GTCCAATATCTGGTAT |
|
lhv_0042 |
nrdJ |
-85 |
5.3 |
CCACAAGATATTGTGG |
|
Lactobacillus johnsonii NCC 533
|
|
LJ0137 |
nrdD |
-63 |
4.6 |
CTACAATATCATGTAG |
|
LJ1824 |
dgk1 |
-56 |
4.5 |
CTACCAGATATTGAAT |
|
LJ0643 |
pnuN |
-46 |
5.7 |
GCACAATATATTGTGT |
|
LJ1824 |
dgk1 |
-26 |
5.3 |
AAACTATATATTGTAG |
|
Lactobacillus plantarum WCFS1
|
|
lp_1329 |
dgk2 |
-72 |
3.9 |
AAAGTCTATATGGTAT |
|
lp_0694 |
nrdH |
-86 |
4.6 |
ACCCTAGATGTTGTGT |
|
lp_1329 |
dgk2 |
-40 |
5.1 |
ATACAATATATTGTGC |
|
lp_1011 |
dgk1 |
-99 |
4.4 |
TCACCAGATATTGCAT |
|
lp_1011 |
dgk1 |
-67 |
5 |
GTACAATATGTAGTGT |
|
lp_2932 |
nrdD |
-49 |
4.4 |
GCACTATCAATTGTAT |
|
lp_2932 |
nrdD |
-80 |
5.5 |
CTACTATATATAGTAT |
|
lp_0259 |
pnuN |
-108 |
5.7 |
ATACAATATATTGTGT |
|
lp_0259 |
pnuN |
-78 |
4.8 |
ACACTACATGTAGTAG |
|
lp_0694 |
nrdH |
-54 |
4.7 |
TCACCACATGTTGTAT |
|
Lactobacillus reuteri JCM 1112
|
|
LAR_1249 |
nrdD |
-92 |
5.3 |
CCACAACATATAGTGT |
|
LAR_0313 |
nrdH |
-115 |
5.6 |
GTACTATATATTGTGT |
|
LAR_1221 |
dgk2 |
-88 |
4.4 |
CCACCAAATATTGTAA |
|
LAR_1221 |
dgk2 |
-56 |
5 |
CCACAATATTTTGTAG |
|
LAR_1670 |
pnuN |
-72 |
5.6 |
CCACAATATCTTGTGT |
|
LAR_1670 |
pnuN |
-30 |
4.9 |
GCACAACATATAGTAG |
|
Lactobacillus rhamnosus GG
|
|
LGG_00138 |
nrdD |
-131 |
5.5 |
CCACTATATAGTGTAT |
|
LGG_01221 |
pnuN |
-107 |
4.9 |
CACCAATATATTGTAT |
|
LGG_01221 |
pnuN |
-139 |
3.9 |
TTAGTACATGTTGTGG |
|
LGG_01473 |
nrdH |
-85 |
4.6 |
CCCCAAGATATGGTGT |
|
LGG_01800 |
nrdG |
-145 |
5 |
ATACTACATCTTGTAG |
|
LGG_02296 |
nrdJ |
-31 |
5.3 |
ATACCATATCTTGTAT |
|
Lactobacillus sakei subsp. sakei 23K
|
|
LSA0942 |
nrdH |
-89 |
5 |
CTACCATATCTGGTAT |
|
LSA1459 |
nrdD |
-75 |
5.1 |
ACACTATATATAGTTG |
|
LSA1189 |
pnuN |
-155 |
4.2 |
CTACCATATTTTGAAT |
|
LSA1189 |
pnuN |
-105 |
5.4 |
GTACTATATATAGTGT |
|
Lactobacillus salivarius subsp. salivarius UCC118
|
|
LSL_1332 |
nrdD |
-108 |
5.5 |
ATACTATATATAGTGT |
|
LSL_1332 |
nrdD |
-76 |
5.9 |
ACACTATATATTGTAT |
|
LSL_1230 |
nrdH |
-84 |
5.5 |
CCACAATATATGGTGT |
|
LSL_1230 |
nrdH |
-51 |
4.9 |
TCTCTATATATTGTAT |
|
Pediococcus pentosaceus ATCC 25745
|
|
PEPE_1487 |
nrdH |
-122 |
5.3 |
GCACAATATATAGTGG |
|
PEPE_0650 |
dgk2 |
-83 |
5.2 |
ATACAATATGTTGTGG |
|
PEPE_1437 |
dgk1 |
-77 |
4.1 |
TTTCAAGATATTGTTT |
|
PEPE_1437 |
dgk1 |
-46 |
4.4 |
GTACAATATGTAGTGC |
|
PEPE_0483 |
mntH2 |
-133 |
5.7 |
ATACTATATATTGTAT |
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