Regulog CzcR1 - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | ArsR |
| Regulation mode: | repressor |
| Biological process: | Zinc resistance; Cobalt resistance; Cadmium resistance |
| Effector: | |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By trascription factor - CzrA
- By TF family - ArsR
- By pathway - Zinc resistance
- By pathway - Cobalt resistance
- By pathway - Cadmium resistance
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus brevis ATCC 367 | ||
| Lactobacillus casei ATCC 334 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | 2 | 2 |
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus johnsonii NCC 533 | 2 | 2 |
| Lactobacillus plantarum WCFS1 | ||
| Lactobacillus reuteri JCM 1112 | 2 | 1 |
| Lactobacillus rhamnosus GG | ||
| Lactobacillus sakei subsp. sakei 23K | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | ||
| Oenococcus oeni PSU-1 | ||
| Pediococcus pentosaceus ATCC 25745 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| czcD |
Gene: LBA0340: Cobalt-zinc-cadmium resistance protein CzcD |
Gene: LVIS_1719: Cobalt-zinc-cadmium resistance protein CzcD |
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Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -76 score = 6.39097 sequence = ATATACCAAAAATGATATAT Site: position = -113 score = 4.97513 sequence = GTATATTATTTTTGTAATAT Gene: LBUL_1220: Cobalt-zinc-cadmium resistance protein CzcD |
Gene: LAF_1544: Cobalt-zinc-cadmium resistance protein CzcD |
Gene: lhv_0353: Cobalt-zinc-cadmium resistance protein CzcD |
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Lactobacillus johnsonii NCC 533 Site: position = -35 score = 6.27815 sequence = GTATACCAAATTCGATATAT Site: position = -72 score = 6.12555 sequence = ATATATCAAAAATGGAATAT Gene: LJ0377: Cobalt-zinc-cadmium resistance protein CzcD |
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Gene: LAR_1416: Cobalt-zinc-cadmium resistance protein CzcD |
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Cobalt-zinc-cadmium resistance protein CzcD |
| CRON 2. | ||||||||||||||||
| cadD1 |
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Gene: LVIS_0221: Predicted permease, cadmium resistance protein |
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Gene: LAF_0146: Predicted permease, cadmium resistance protein |
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Gene: lp_2998: Predicted permease, cadmium resistance protein |
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Lactobacillus reuteri JCM 1112 Site: position = -60 score = 6.51911 sequence = ATATATCAAATTCGATATAT Site: position = -33 score = 6.32256 sequence = GTATATCGAATTTGATATAT Gene: LAR_1705: Predicted permease, cadmium resistance protein |
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Predicted permease, cadmium resistance protein |
| czcR1 |
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Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -88 score = 6.39097 sequence = ATATATCATTTTTGGTATAT Site: position = -51 score = 4.97513 sequence = ATATTACAAAAATAATATAC Gene: LBUL_1221: Cobalt-zinc-cadmium resistance transcriptional regulator CzcR1, ArsR family |
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Lactobacillus johnsonii NCC 533 Site: position = -40 score = 6.12555 sequence = ATATTCCATTTTTGATATAT Site: position = -77 score = 6.27815 sequence = ATATATCGAATTTGGTATAC Gene: LJ0376: Cobalt-zinc-cadmium resistance transcriptional regulator CzcR1, ArsR family |
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Gene: LAR_1706: Cobalt-zinc-cadmium resistance transcriptional regulator CzcR1, ArsR family |
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Cobalt-zinc-cadmium resistance transcriptional regulator CzcR1, ArsR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |