Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of ArgR regulog to Lactobacillus fermentum IFO 3956

Reference regulog properties
Source regulog: ArgR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor, activator
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus fermentum IFO 3956
Orthologous TF(s) LAF_1823, LAF_1258
Regulated genes 6
Built upon 27 sites [see more]
Predicted regulatory interactions in Lactobacillus fermentum IFO 3956
Locus tag Position Score Sequence
Position: -104
Score: 3.2
Sequence: TATGCATAAATCGGGAAA
Position: -63
Score: 3.6
Sequence: CTTGCATAATAATTCGTT
Position: -1
Score: 3.1
Sequence: GATGGAAGATAAAACAAT
Position: 7
Score: 3.1
Sequence: ATAAAACAATGATTGAAA
Locus tag: LAF_0624
LAF_0624 -104 3.2 TATGCATAAATCGGGAAA
-63 3.6 CTTGCATAATAATTCGTT
-1 3.1 GATGGAAGATAAAACAAT
7 3.1 ATAAAACAATGATTGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: artM
Ortholog function: Arginine ABC transporter, ATP-binding protein
Lactobacillus brevis ATCC 367 LVIS_1201 -161 4.6 AATGTATAAATTTTTATA
-96 4.9 AGTGTATAAAAATAGATA
Lactobacillus casei ATCC 334 LSEI_1345 -56 4.2 ATTGCATAAAAATCAATT
Lactobacillus fermentum IFO 3956 LAF_0624 -63 3.6 CTTGCATAATAATTCGTT
Lactobacillus plantarum WCFS1 lp_2110 -17 3.8 CTTGCATAAATAATCATA
Lactobacillus reuteri JCM 1112 LAR_0697 -253 4.7 ATTGCATAAATAAACATT
Lactobacillus rhamnosus GG LGG_01357 -56 4.3 ATTGCATAAAAATTGAAT
Lactobacillus sakei subsp. sakei 23K LSA1056 -55 4.5 ATTGCATAAATATTTATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1540 -162 3.5 GTTACATAAATATATTTT
-82 4.3 CTTGCATAAATAAACAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0629 -59 3 GATGCATATAAATTATAA
Pediococcus pentosaceus ATCC 25745 PEPE_1136 -94 5.2 AATGTATAAAAATTCATA
Position: -222
Score: 3.4
Sequence: TATGTGTATAAATATTTA
Position: -220
Score: 4.9
Sequence: TGTGTATAAATATTTAGT
Position: -171
Score: 3.9
Sequence: AAGGAGTAATTTTAAAAT
Position: -102
Score: 4.6
Sequence: TCTGGATAAAAATAAAAA
Locus tag: LAF_0726
LAF_0726 -222 3.4 TATGTGTATAAATATTTA
-220 4.9 TGTGTATAAATATTTAGT
-171 3.9 AAGGAGTAATTTTAAAAT
-102 4.6 TCTGGATAAAAATAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Lactobacillus fermentum IFO 3956 LAF_0726 -220 4.9 TGTGTATAAATATTTAGT
Lactobacillus plantarum WCFS1 lp_0528 -117 4.5 AATGAATATTTTTTCAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0060 -71 3.4 TTTGCATATTTATTGTAT
Position: -146
Score: 3.5
Sequence: AGAAAATACGGATAAAAT
Position: -120
Score: 3.3
Sequence: CGTTCATAAATAACCAAT
Position: -47
Score: 3.4
Sequence: CGTCACTAAATATTTATA
Position: -43
Score: 4
Sequence: ACTAAATATTTATACACA
Position: -41
Score: 3.3
Sequence: TAAATATTTATACACATA
Position: -37
Score: 3.7
Sequence: TATTTATACACATAAAAC
Position: -1
Score: 3.7
Sequence: AATGAATAAATACCTCAT
Locus tag: LAF_0727
LAF_0727 -146 3.5 AGAAAATACGGATAAAAT
-120 3.3 CGTTCATAAATAACCAAT
-47 3.4 CGTCACTAAATATTTATA
-43 4 ACTAAATATTTATACACA
-41 3.3 TAAATATTTATACACATA
-37 3.7 TATTTATACACATAAAAC
-1 3.7 AATGAATAAATACCTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: carA
Ortholog function: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)
Lactobacillus fermentum IFO 3956 LAF_0727 -120 3.3 CGTTCATAAATAACCAAT
Lactobacillus plantarum WCFS1 lp_0527 -169 4.9 ATTGAAAAAATATTCATT
Position: -209
Score: 3.9
Sequence: TGGGGGTGAATATACAAA
Position: -203
Score: 3.3
Sequence: TGAATATACAAAATAAAA
Position: -193
Score: 3.1
Sequence: AAATAAAATGCATACAAT
Position: -125
Score: 3.1
Sequence: ATTTGATTTTCATGCAAA
Position: -104
Score: 3.6
Sequence: AGTGTATCCTTAGTCACA
Position: -87
Score: 2.9
Sequence: AATTAATCATTGAAAATA
Position: -83
Score: 3.3
Sequence: AATCATTGAAAATAGAAA
Locus tag: LAF_1625
LAF_1625 -209 3.9 TGGGGGTGAATATACAAA
-203 3.3 TGAATATACAAAATAAAA
-193 3.1 AAATAAAATGCATACAAT
-125 3.1 ATTTGATTTTCATGCAAA
-104 3.6 AGTGTATCCTTAGTCACA
-87 2.9 AATTAATCATTGAAAATA
-83 3.3 AATCATTGAAAATAGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argG
Ortholog function: Argininosuccinate synthase (EC 6.3.4.5)
Lactobacillus casei ATCC 334 LSEI_2811 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus fermentum IFO 3956 LAF_1625 -136 2.3 CTTGCATTTTTATTTGAT
Lactobacillus plantarum WCFS1 lp_0775 -139 4.1 TCTGCATAAAAATTCTAT
Lactobacillus reuteri JCM 1112 LAR_0702 -164 4.7 ATTAAATAATTATTCTAT
Lactobacillus rhamnosus GG LGG_02817 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0306 -47 3.5 AATGAATAGATTATGAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1459 -73 3.8 ATTGCATATTTAATCAAA
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