Regulog Zur - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Zinc homeostasis |
| Effector: | Zinc ion, (Zn2+) |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By trascription factor - Zur
- By TF family - FUR
- By effector - Zinc ion, (Zn2+)
- By pathway - Zinc homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus brevis ATCC 367 | 5 | 3 |
| Lactobacillus casei ATCC 334 | 6 | 5 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus fermentum IFO 3956 | 5 | 3 |
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | 7 | 6 |
| Lactobacillus reuteri JCM 1112 | 3 | 2 |
| Lactobacillus rhamnosus GG | 5 | 4 |
| Lactobacillus sakei subsp. sakei 23K | 3 | 1 |
| Lactobacillus salivarius subsp. salivarius UCC118 | 6 | 3 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 4 | 2 |
| Oenococcus oeni PSU-1 | 4 | 3 |
| Pediococcus pentosaceus ATCC 25745 | 4 | 2 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| zur |
|
Gene: LVIS_1778: Zinc homeostasis transcriptional regulator Zur, Fur family |
*
Lactobacillus casei ATCC 334 Site: position = -69 score = 6.48354 sequence = TTAATCGTAATCAATACGATTTA Gene: LSEI_2025: Zinc homeostasis transcriptional regulator Zur, Fur family |
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*
Lactobacillus fermentum IFO 3956 Site: position = -37 score = 5.82657 sequence = AAAAACGTAATCATTACTAAAAA Gene: LAF_1665: Zinc homeostasis transcriptional regulator Zur, Fur family |
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*
Lactobacillus plantarum WCFS1 Site: position = -56 score = 6.89101 sequence = TAAATAGTAATGATTATGATTTA Gene: lp_0868: Zinc homeostasis transcriptional regulator Zur, Fur family |
Gene: LAR_1528: Zinc homeostasis transcriptional regulator Zur, Fur family |
*
Lactobacillus rhamnosus GG Site: position = -70 score = 5.3752 sequence = CTAATCGTAACCAGTACGATTTG Gene: LGG_02012: Zinc homeostasis transcriptional regulator Zur, Fur family |
Gene: LSA0109: Zinc homeostasis transcriptional regulator Zur, Fur family |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -35 score = 6.56728 sequence = TAGAAAGTAAAGATTACTATTTA Gene: LSL_1450: Zinc homeostasis transcriptional regulator Zur, Fur family |
Gene: LEUM_0802: Zinc homeostasis transcriptional regulator Zur, Fur family |
*
Oenococcus oeni PSU-1 Site: position = -95 score = 5.39986 sequence = TTAATGGTAAATATTACTTTTAC Site: position = -53 score = 6.00086 sequence = TACTTAGTAATGATTACTTGTTA Gene: OEOE_1189: Zinc homeostasis transcriptional regulator Zur, Fur family |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -36 score = 7.28434 sequence = TAAAACGTAATGATTACTATTTA Gene: PEPE_0386: Zinc homeostasis transcriptional regulator Zur, Fur family |
Zinc homeostasis transcriptional regulator Zur, Fur family |
| CRON 2. | ||||||||||||||||
| znuA |
|
*2
Lactobacillus brevis ATCC 367 Site: position = -46 score = 6.55558 sequence = TAAACGGTAATCATTACTGTTTA Gene: LVIS_0470: Zinc ABC transporter, substrate-binding protein Site: position = -41 score = 6.84989 sequence = TAAATAGTAATAATTACCATTTA Gene: LVIS_0566: Zinc ABC transporter, substrate-binding protein |
*
Lactobacillus casei ATCC 334 Site: position = -183 score = 6.96151 sequence = TAATTCGTAATCATTACTATTTA Site: position = -40 score = 6.72859 sequence = TAAATCGTAATTATTACGTTTTG Gene: LSEI_2427: Zinc ABC transporter, substrate-binding protein |
|
*
Lactobacillus fermentum IFO 3956 Site: position = -48 score = 6.7073 sequence = TTAATCGTAAGGATTACGATTTA Gene: LAF_0191: Zinc ABC transporter, substrate-binding protein |
|
|
*2
Lactobacillus plantarum WCFS1 Site: position = -44 score = 6.63799 sequence = TTAACAGTAATGGTTACGATTTA Gene: lp_3302: Zinc ABC transporter, substrate-binding protein Site: position = -88 score = 6.81674 sequence = TAAAACGTAAATATTACTATTTA Site: position = -39 score = 7.28434 sequence = TAAAACGTAATGATTACTATTTA Gene: lp_3018: Zinc ABC transporter, substrate-binding protein |
*
Lactobacillus reuteri JCM 1112 Site: position = -36 score = 6.75528 sequence = TAAATAGTAACGATTACGATTAA Gene: LAR_0207: Zinc ABC transporter, substrate-binding protein |
*
Lactobacillus rhamnosus GG Site: position = -181 score = 6.73087 sequence = TAAATCGTAATCATTACGCTTAA Site: position = -40 score = 6.87575 sequence = TAAATCGTAATGATTACGTTTTG Gene: LGG_02423: Zinc ABC transporter, substrate-binding protein |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -37 score = 6.51111 sequence = TAAAGCGTAACTATTACGATTTA Gene: LSA0282: Zinc ABC transporter, substrate-binding protein |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -40 score = 6.96151 sequence = TAAAAAGTAATGATTACTATATA Gene: LSL_1587: Zinc ABC transporter, substrate-binding protein |
*2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -171 score = 6.21331 sequence = TTTAAAGTAATCATTACTTTTTG Site: position = -142 score = 6.18857 sequence = TTAATAGTAATGATTACTATAAT Gene: LEUM_0803: Zinc ABC transporter, substrate-binding protein Gene: LEUM_1611: Zinc ABC transporter, substrate-binding protein |
*
Oenococcus oeni PSU-1 Site: position = -76 score = 5.5295 sequence = GTAAAAGTAATATTTACCATTAA Site: position = -118 score = 6.01278 sequence = TAACAAGTAATCATTACTAAGTA Gene: OEOE_1188: Zinc ABC transporter, substrate-binding protein |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -33 score = 6.92786 sequence = TAAATAGTAATTATTACTCTTTA Gene: PEPE_0289: Zinc ABC transporter, substrate-binding protein |
Zinc ABC transporter, substrate-binding protein |
| znuC |
Gene: LBA1772: Zinc ABC transporter, ATP-binding protein |
Gene: LVIS_0471: Zinc ABC transporter, ATP-binding protein |
*
Lactobacillus casei ATCC 334 Site: position = -39 score = 6.38872 sequence = TAAACCGTAATCGTTACCGTTTA Gene: LSEI_0242: Zinc ABC transporter, ATP-binding protein |
Gene: LBUL_1884: Zinc ABC transporter, ATP-binding protein |
Gene: LAF_0192: Zinc ABC transporter, ATP-binding protein |
|
Gene: LJ0578: Zinc ABC transporter, ATP-binding protein |
*
Lactobacillus plantarum WCFS1 Site: position = -51 score = 6.85012 sequence = AAAATAGTAATCATTACGATTTA Gene: lp_0463: Zinc ABC transporter, ATP-binding protein |
Gene: LAR_0208: Zinc ABC transporter, ATP-binding protein |
*
Lactobacillus rhamnosus GG Site: position = -39 score = 6.35616 sequence = TAAATCGTAATCGTTACCGTTTG Gene: LGG_00285: Zinc ABC transporter, ATP-binding protein |
Gene: LSA0283: Zinc ABC transporter, ATP-binding protein |
Gene: LSL_1586: Zinc ABC transporter, ATP-binding protein |
2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0804: Zinc ABC transporter, ATP-binding protein Gene: LEUM_1610: Zinc ABC transporter, ATP-binding protein |
Gene: OEOE_1187: Zinc ABC transporter, ATP-binding protein |
Gene: PEPE_0290: Zinc ABC transporter, ATP-binding protein |
Zinc ABC transporter, ATP-binding protein |
| znuB |
Gene: LBA1771: Zinc ABC transporter, permease protein |
Gene: LVIS_0472: Zinc ABC transporter, permease protein |
Gene: LSEI_0243: Zinc ABC transporter, permease protein |
Gene: LBUL_1883: Zinc ABC transporter, permease protein |
Gene: LAF_0193: Zinc ABC transporter, permease protein |
|
Gene: LJ0579: Zinc ABC transporter, permease protein |
Gene: lp_0464: Zinc ABC transporter, permease protein |
*
Lactobacillus reuteri JCM 1112 Site: position = -9 score = 5.32352 sequence = TAAAAAGTAATGTTAACTTTAAG Gene: LAR_0209: Zinc ABC transporter, permease protein |
Gene: LGG_00286: Zinc ABC transporter, permease protein |
Gene: LSA0284: Zinc ABC transporter, permease protein |
Gene: LSL_1585: Zinc ABC transporter, permease protein |
2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_1609: Zinc ABC transporter, permease protein Gene: LEUM_0805: Zinc ABC transporter, permease protein |
|
Gene: PEPE_0291: Zinc ABC transporter, permease protein |
Zinc ABC transporter, permease protein |
| CRON 3. | ||||||||||||||||
| rpsN2 |
|
*
Lactobacillus brevis ATCC 367 Site: position = -37 score = 5.92368 sequence = TAAAGCGTAATAATTACTATCAA Gene: LVIS_0360: Small subunit ribosomal protein S14, zinc-independent |
*2
Lactobacillus casei ATCC 334 Site: position = -248 score = 6.89799 sequence = TAAATAGTAATGATTACGAATTA Gene: LSEI_2425: Small subunit ribosomal protein S14, zinc-independent Gene: LSEI_0910: Small subunit ribosomal protein S14, zinc-independent |
|
*
Lactobacillus fermentum IFO 3956 Site: position = -82 score = 6.49412 sequence = TAAATGGTAATAATTACTATTTG Gene: LAF_1127: Small subunit ribosomal protein S14, zinc-independent |
|
Gene: LJ0166: Small subunit ribosomal protein S14, zinc-independent |
*
Lactobacillus plantarum WCFS1 Site: position = -125 score = 5.58235 sequence = AAAATAGTAGCTGTTACGATTTA Gene: lp_2216: Small subunit ribosomal protein S14, zinc-independent |
Gene: LAR_1024: Small subunit ribosomal protein S14, zinc-independent |
*2
Lactobacillus rhamnosus GG Site: position = -243 score = 6.77833 sequence = TTAAGCGTAATGATTACGATTTA Gene: LGG_02422: Small subunit ribosomal protein S14, zinc-independent Gene: LGG_00873: Small subunit ribosomal protein S14, zinc-independent |
Gene: LSA0266: Small subunit ribosomal protein S14, zinc-independent |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -42 score = 7.2976 sequence = TAAAAAGTAATGATTACTATTTA Site: position = -63 score = 5.72721 sequence = TAAATCGTAATTGATATCATTTA Gene: LSL_1944: Small subunit ribosomal protein S14, zinc-independent |
Gene: LEUM_1360: Small subunit ribosomal protein S14, zinc-independent |
Gene: OEOE_1030: Small subunit ribosomal protein S14, zinc-independent |
Gene: PEPE_0222: Small subunit ribosomal protein S14, zinc-independent |
Small subunit ribosomal protein S14, zinc-independent |
| lp_0947 |
|
|
*
Lactobacillus casei ATCC 334 Site: position = -183 score = 6.37437 sequence = CAAAACGTAATAATTACGATTTA Site: position = -40 score = 6.89799 sequence = TAAATAGTAATGATTACGAATTA Gene: LSEI_2426: Conserved hypothetical protein |
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*
Lactobacillus plantarum WCFS1 Site: position = -36 score = 6.72556 sequence = TAAATGGTAATAATTACTATTTA Gene: lp_0947: Conserved hypothetical protein |
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Gene: LSL_1943: Conserved hypothetical protein |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -65 score = 6.079 sequence = TAAATAGTAATAATTACTATAAT Site: position = -43 score = 6.67214 sequence = TTAAAAGTAATTGTTACTATTTA Gene: LEUM_0082: Conserved hypothetical protein |
*
Oenococcus oeni PSU-1 Site: position = -42 score = 6.6146 sequence = TAAATAGTAATAATTACTTTTAA Gene: OEOE_0084: Conserved hypothetical protein |
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Conserved hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |