Propagation of ArgR regulog to Lactobacillus reuteri DSM 20016
| Source regulog: | ArgR - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | repressor, activator |
| Biological process: | Arginine degradation; Arginine biosynthesis |
| Effector: | Arginine |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus reuteri DSM 20016 |
| Orthologous TF(s) | Lreu_1179, Lreu_0446 |
| Regulated genes | 6 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: 11
Score: 3.3 Sequence: AACTGATATTCATAAAAT
Locus tag: Lreu_0085
|
||||
| Lreu_0085 | 11 | 3.3 | AACTGATATTCATAAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: carB | ||||
| Ortholog function: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) | ||||
| Lactobacillus fermentum IFO 3956 | LAF_0728 | -120 | 3.3 | CGTTCATAAATAACCAAT |
| Lactobacillus plantarum WCFS1 | lp_0526 | -169 | 4.9 | ATTGAAAAAATATTCATT |
| Lactobacillus reuteri JCM 1112 | LAR_0080 | -261 | 4.7 | TTTGCATAAAAATTCATT |
| -136 | 3.6 | CATACATATATATTCAAT | ||
|
Position: -261
Score: 4.7 Sequence: TTTGCATAAAAATTCATT
Locus tag: Lreu_0086
|
||||
| Lreu_0086 | -261 | 4.7 | TTTGCATAAAAATTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: carA | ||||
| Ortholog function: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) | ||||
| Lactobacillus reuteri JCM 1112 | LAR_0081 | -261 | 4.7 | TTTGCATAAAAATTCATT |
| -136 | 3.6 | CATACATATATATTCAAT | ||
|
Position: 11
Score: 3.5 Sequence: AATGATTGAAATTAAAAA
Position: 19
Score: 3.4 Sequence: AAATTAAAAACTTACAGA
Position: 21
Score: 3 Sequence: ATTAAAAACTTACAGAAA
Position: 30
Score: 3.4 Sequence: TTACAGAAAAAATTCAAA
Position: 32
Score: 3.3 Sequence: ACAGAAAAAATTCAAAAA
Locus tag: Lreu_0726
|
||||
| Lreu_0726 | 11 | 3.5 | AATGATTGAAATTAAAAA | |
| 19 | 3.4 | AAATTAAAAACTTACAGA | ||
| 21 | 3 | ATTAAAAACTTACAGAAA | ||
| 30 | 3.4 | TTACAGAAAAAATTCAAA | ||
| 32 | 3.3 | ACAGAAAAAATTCAAAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: artM | ||||
| Ortholog function: Arginine ABC transporter, ATP-binding protein | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1201 | -161 | 4.6 | AATGTATAAATTTTTATA |
| -96 | 4.9 | AGTGTATAAAAATAGATA | ||
| Lactobacillus casei ATCC 334 | LSEI_1345 | -56 | 4.2 | ATTGCATAAAAATCAATT |
| Lactobacillus fermentum IFO 3956 | LAF_0624 | -63 | 3.6 | CTTGCATAATAATTCGTT |
| Lactobacillus plantarum WCFS1 | lp_2110 | -17 | 3.8 | CTTGCATAAATAATCATA |
| Lactobacillus reuteri JCM 1112 | LAR_0697 | -253 | 4.7 | ATTGCATAAATAAACATT |
| Lactobacillus rhamnosus GG | LGG_01357 | -56 | 4.3 | ATTGCATAAAAATTGAAT |
| Lactobacillus sakei subsp. sakei 23K | LSA1056 | -55 | 4.5 | ATTGCATAAATATTTATA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1540 | -162 | 3.5 | GTTACATAAATATATTTT |
| -82 | 4.3 | CTTGCATAAATAAACAAT | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0629 | -59 | 3 | GATGCATATAAATTATAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1136 | -94 | 5.2 | AATGTATAAAAATTCATA |
|
Position: -188
Score: 4.3 Sequence: TTTAAATAAAAATTTAAA
Position: -186
Score: 3.8 Sequence: TAAATAAAAATTTAAATT
Position: -123
Score: 3.8 Sequence: TTTTAATTGTTATGCAAA
Position: -103
Score: 4.4 Sequence: TGTGAATATTTATTCTTT
Position: -73
Score: 4.7 Sequence: ATTGCATAAATAAACATT
Position: -53
Score: 3.7 Sequence: AGTGTATATTTAGTAACA
Locus tag: Lreu_0727
|
||||
| Lreu_0727 | -188 | 4.3 | TTTAAATAAAAATTTAAA | |
| -186 | 3.8 | TAAATAAAAATTTAAATT | ||
| -123 | 3.8 | TTTTAATTGTTATGCAAA | ||
| -103 | 4.4 | TGTGAATATTTATTCTTT | ||
| -73 | 4.7 | ATTGCATAAATAAACATT | ||
| -53 | 3.7 | AGTGTATATTTAGTAACA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: artPQ | ||||
| Ortholog function: Arginine ABC transporter, substrate-binding and permease protein | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1200 | -161 | 4.6 | AATGTATAAATTTTTATA |
| -96 | 4.9 | AGTGTATAAAAATAGATA | ||
| Lactobacillus casei ATCC 334 | LSEI_2810 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus casei ATCC 334 | LSEI_1344 | -56 | 4.2 | ATTGCATAAAAATCAATT |
| Lactobacillus plantarum WCFS1 | lp_2111 | -17 | 3.8 | CTTGCATAAATAATCATA |
| Lactobacillus reuteri JCM 1112 | LAR_0698 | -253 | 4.7 | ATTGCATAAATAAACATT |
| Lactobacillus rhamnosus GG | LGG_02816 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus rhamnosus GG | LGG_01356 | -56 | 4.3 | ATTGCATAAAAATTGAAT |
| Lactobacillus sakei subsp. sakei 23K | LSA1057 | -55 | 4.5 | ATTGCATAAATATTTATA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1541 | -162 | 3.5 | GTTACATAAATATATTTT |
| -82 | 4.3 | CTTGCATAAATAAACAAT | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0655 | -62 | 5.3 | ATTGTATAAAAATTCAAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1137 | -94 | 5.2 | AATGTATAAAAATTCATA |
|
Position: -155
Score: 3 Sequence: TTATTCTATTTTTAAACT
Position: -153
Score: 3 Sequence: ATTCTATTTTTAAACTCT
Position: -132
Score: 3.1 Sequence: TATGCATGAATAATTTAT
Position: -128
Score: 3.1 Sequence: CATGAATAATTTATATTT
Position: -114
Score: 3.1 Sequence: ATTTTATGCATAAAAAGA
Position: -110
Score: 3.4 Sequence: TATGCATAAAAAGAGTTT
Position: -91
Score: 4.5 Sequence: TTTGAAAAAATATGCTAA
Position: -85
Score: 3.1 Sequence: AAAATATGCTAAAACTAT
Position: -74
Score: 3.1 Sequence: AAACTATTGATTTTTATT
Position: -70
Score: 3.5 Sequence: TATTGATTTTTATTCATA
Position: -49
Score: 3.5 Sequence: CTCGTATATTTATAAACA
Position: -43
Score: 3.3 Sequence: TATTTATAAACAACAAAT
Position: -36
Score: 3.4 Sequence: AAACAACAAATTTCAAAT
Position: -1
Score: 3.1 Sequence: TATGTCAAAAGAAAAAAT
Locus tag: Lreu_0731
|
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| Lreu_0731 | -155 | 3 | TTATTCTATTTTTAAACT | |
| -153 | 3 | ATTCTATTTTTAAACTCT | ||
| -132 | 3.1 | TATGCATGAATAATTTAT | ||
| -128 | 3.1 | CATGAATAATTTATATTT | ||
| -114 | 3.1 | ATTTTATGCATAAAAAGA | ||
| -110 | 3.4 | TATGCATAAAAAGAGTTT | ||
| -91 | 4.5 | TTTGAAAAAATATGCTAA | ||
| -85 | 3.1 | AAAATATGCTAAAACTAT | ||
| -74 | 3.1 | AAACTATTGATTTTTATT | ||
| -70 | 3.5 | TATTGATTTTTATTCATA | ||
| -49 | 3.5 | CTCGTATATTTATAAACA | ||
| -43 | 3.3 | TATTTATAAACAACAAAT | ||
| -36 | 3.4 | AAACAACAAATTTCAAAT | ||
| -1 | 3.1 | TATGTCAAAAGAAAAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argG | ||||
| Ortholog function: Argininosuccinate synthase (EC 6.3.4.5) | ||||
| Lactobacillus casei ATCC 334 | LSEI_2811 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus fermentum IFO 3956 | LAF_1625 | -136 | 2.3 | CTTGCATTTTTATTTGAT |
| Lactobacillus plantarum WCFS1 | lp_0775 | -139 | 4.1 | TCTGCATAAAAATTCTAT |
| Lactobacillus reuteri JCM 1112 | LAR_0702 | -164 | 4.7 | ATTAAATAATTATTCTAT |
| Lactobacillus rhamnosus GG | LGG_02817 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0306 | -47 | 3.5 | AATGAATAGATTATGAAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1459 | -73 | 3.8 | ATTGCATATTTAATCAAA |