Regulog MurR - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | RpiR |
| Regulation mode: | |
| Biological process: | N-acetylmuramate utilization |
| Effector: | N-acetylmuramate-6-phosphate |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By TF family - RpiR
- By effector - N-acetylmuramate-6-phosphate
- By pathway - N-acetylmuramate utilization
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | 4 | 1 |
| Lactobacillus brevis ATCC 367 | ||
| Lactobacillus casei ATCC 334 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus johnsonii NCC 533 | 4 | 1 |
| Lactobacillus plantarum WCFS1 | 5 | 1 |
| Lactobacillus reuteri JCM 1112 | ||
| Lactobacillus rhamnosus GG | ||
| Lactobacillus sakei subsp. sakei 23K | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | ||
| Oenococcus oeni PSU-1 | ||
| Pediococcus pentosaceus ATCC 25745 | 3 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| murX |
Gene: LBA1703: Predicted outer membrane protein |
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Gene: LJ1818: Predicted outer membrane protein |
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Lactobacillus plantarum WCFS1 Site: position = -110 score = 5.4536 sequence = AAGTAATTTAGTTTCTT Gene: lp_3524: Predicted outer membrane protein |
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Gene: LGG_00127: Predicted outer membrane protein |
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Predicted outer membrane protein |
| murQ |
Gene: LBA1704: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
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Gene: LSEI_0120: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
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Gene: LJ1819: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
Gene: lp_3523: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
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Gene: LGG_00126: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
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Pediococcus pentosaceus ATCC 25745 Site: position = -66 score = 5.74968 sequence = TTGAAATGTTATTTCTT Gene: PEPE_1043: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-) |
| murP |
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Lactobacillus acidophilus NCFM Site: position = -39 score = 6.22444 sequence = ATGAAATATTGTTACTT Gene: LBA1705: MurNAc-specific PTS system, EIIBC component |
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Gene: LSEI_0119: MurNAc-specific PTS system, EIIBC component |
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Lactobacillus johnsonii NCC 533 Site: position = -36 score = 5.66699 sequence = ATGAAACATTTTTACAT Gene: LJ1820: MurNAc-specific PTS system, EIIBC component |
2
Lactobacillus plantarum WCFS1 Gene: lp_3520: MurNAc-specific PTS system, EIIBA component Gene: lp_3522: MurNAc-specific PTS system, EIIBC component |
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Gene: LGG_00125: MurNAc-specific PTS system, EIIBC component |
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Gene: PEPE_1042: MurNAc-specific PTS system, EIIBC component |
MurNAc-specific PTS system, EIIBC component |
| murR |
Gene: LBA1702: N-acetylmuramate utilization transcriptional regulator MurR, RpiR family |
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Gene: LJ1817: N-acetylmuramate utilization transcriptional regulator MurR, RpiR family |
Gene: lp_3521: N-acetylmuramate utilization transcriptional regulator MurR, RpiR family |
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Gene: PEPE_1041: N-acetylmuramate utilization transcriptional regulator MurR, RpiR family |
N-acetylmuramate utilization transcriptional regulator MurR, RpiR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |