Regulog MurR - Lactobacillaceae

Properties
Regulator type:	Transcription factor
Regulator family:	RpiR
Regulation mode:
Biological process:	N-acetylmuramate utilization
Effector:	N-acetylmuramate-6-phosphate
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Lactobacillaceae
By TF family - RpiR
By effector - N-acetylmuramate-6-phosphate
By pathway - N-acetylmuramate utilization

Statistics of regulated genes
Genome	Genes	Operons
Lactobacillus acidophilus NCFM	4	1
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533	4	1
Lactobacillus plantarum WCFS1	5	1
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG
Lactobacillus sakei subsp. sakei 23K
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745	3	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
murX	Lactobacillus acidophilus NCFM Gene: LBA1703: Predicted outer membrane protein	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533 Gene: LJ1818: Predicted outer membrane protein	* Lactobacillus plantarum WCFS1 Site: position = -110 score = 5.4536 sequence = AAGTAATTTAGTTTCTT Gene: lp_3524: Predicted outer membrane protein	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_00127: Predicted outer membrane protein	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Predicted outer membrane protein
murQ	Lactobacillus acidophilus NCFM Gene: LBA1704: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334 Gene: LSEI_0120: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533 Gene: LJ1819: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	Lactobacillus plantarum WCFS1 Gene: lp_3523: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_00126: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	* Pediococcus pentosaceus ATCC 25745 Site: position = -66 score = 5.74968 sequence = TTGAAATGTTATTTCTT Gene: PEPE_1043: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)	N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
murP	* Lactobacillus acidophilus NCFM Site: position = -39 score = 6.22444 sequence = ATGAAATATTGTTACTT Gene: LBA1705: MurNAc-specific PTS system, EIIBC component	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334 Gene: LSEI_0119: MurNAc-specific PTS system, EIIBC component	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	* Lactobacillus johnsonii NCC 533 Site: position = -36 score = 5.66699 sequence = ATGAAACATTTTTACAT Gene: LJ1820: MurNAc-specific PTS system, EIIBC component	2 Lactobacillus plantarum WCFS1 Gene: lp_3520: MurNAc-specific PTS system, EIIBA component Gene: lp_3522: MurNAc-specific PTS system, EIIBC component	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_00125: MurNAc-specific PTS system, EIIBC component	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1042: MurNAc-specific PTS system, EIIBC component	MurNAc-specific PTS system, EIIBC component
murR	Lactobacillus acidophilus NCFM Gene: LBA1702: N-acetylmuramate utilization transcriptional regulator MurR, RpiR family	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533 Gene: LJ1817: N-acetylmuramate utilization transcriptional regulator MurR, RpiR family	Lactobacillus plantarum WCFS1 Gene: lp_3521: N-acetylmuramate utilization transcriptional regulator MurR, RpiR family	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1041: N-acetylmuramate utilization transcriptional regulator MurR, RpiR family	N-acetylmuramate utilization transcriptional regulator MurR, RpiR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog MurR - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --