Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of ArgR regulog to Lactobacillus rhamnosus GG

Reference regulog properties
Source regulog: ArgR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor, activator
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus rhamnosus GG
Orthologous TF(s) LGG_01785, LGG_01678
Regulated genes 4
Built upon 27 sites [see more]
Predicted regulatory interactions in Lactobacillus rhamnosus GG
Locus tag Position Score Sequence
Position: -71
Score: 4
Sequence: AAAATATGAATATTTATT
Position: -67
Score: 3.7
Sequence: TATGAATATTTATTGCAT
Position: -56
Score: 4.3
Sequence: ATTGCATAAAAATTGAAT
Locus tag: LGG_01356
LGG_01356 -71 4 AAAATATGAATATTTATT
-67 3.7 TATGAATATTTATTGCAT
-56 4.3 ATTGCATAAAAATTGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: artPQ
Ortholog function: Arginine ABC transporter, substrate-binding and permease protein
Lactobacillus brevis ATCC 367 LVIS_1200 -161 4.6 AATGTATAAATTTTTATA
-96 4.9 AGTGTATAAAAATAGATA
Lactobacillus casei ATCC 334 LSEI_2810 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus casei ATCC 334 LSEI_1344 -56 4.2 ATTGCATAAAAATCAATT
Lactobacillus plantarum WCFS1 lp_2111 -17 3.8 CTTGCATAAATAATCATA
Lactobacillus reuteri JCM 1112 LAR_0698 -253 4.7 ATTGCATAAATAAACATT
Lactobacillus rhamnosus GG LGG_02816 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus rhamnosus GG LGG_01356 -56 4.3 ATTGCATAAAAATTGAAT
Lactobacillus sakei subsp. sakei 23K LSA1057 -55 4.5 ATTGCATAAATATTTATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1541 -162 3.5 GTTACATAAATATATTTT
-82 4.3 CTTGCATAAATAAACAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0655 -62 5.3 ATTGTATAAAAATTCAAA
Pediococcus pentosaceus ATCC 25745 PEPE_1137 -94 5.2 AATGTATAAAAATTCATA
Position: 7
Score: 3.2
Sequence: AACGTCAAGATATTCATA
Position: 11
Score: 3.2
Sequence: TCAAGATATTCATAAAAT
Locus tag: LGG_01456
LGG_01456 7 3.2 AACGTCAAGATATTCATA
11 3.2 TCAAGATATTCATAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: carB
Ortholog function: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)
Lactobacillus fermentum IFO 3956 LAF_0728 -120 3.3 CGTTCATAAATAACCAAT
Lactobacillus plantarum WCFS1 lp_0526 -169 4.9 ATTGAAAAAATATTCATT
Lactobacillus reuteri JCM 1112 LAR_0080 -261 4.7 TTTGCATAAAAATTCATT
-136 3.6 CATACATATATATTCAAT
Position: -46
Score: 4.4
Sequence: AATGAGTATATATTCAAT
Locus tag: LGG_02816
LGG_02816 -46 4.4 AATGAGTATATATTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: artPQ
Ortholog function: Arginine ABC transporter, substrate-binding and permease protein
Lactobacillus brevis ATCC 367 LVIS_1200 -161 4.6 AATGTATAAATTTTTATA
-96 4.9 AGTGTATAAAAATAGATA
Lactobacillus casei ATCC 334 LSEI_2810 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus casei ATCC 334 LSEI_1344 -56 4.2 ATTGCATAAAAATCAATT
Lactobacillus plantarum WCFS1 lp_2111 -17 3.8 CTTGCATAAATAATCATA
Lactobacillus reuteri JCM 1112 LAR_0698 -253 4.7 ATTGCATAAATAAACATT
Lactobacillus rhamnosus GG LGG_02816 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus rhamnosus GG LGG_01356 -56 4.3 ATTGCATAAAAATTGAAT
Lactobacillus sakei subsp. sakei 23K LSA1057 -55 4.5 ATTGCATAAATATTTATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1541 -162 3.5 GTTACATAAATATATTTT
-82 4.3 CTTGCATAAATAAACAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0655 -62 5.3 ATTGTATAAAAATTCAAA
Pediococcus pentosaceus ATCC 25745 PEPE_1137 -94 5.2 AATGTATAAAAATTCATA
Position: -15
Score: 3.3
Sequence: GGAGGATATATTTTCATG
Locus tag: LGG_02817
LGG_02817 -15 3.3 GGAGGATATATTTTCATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: argG
Ortholog function: Argininosuccinate synthase (EC 6.3.4.5)
Lactobacillus casei ATCC 334 LSEI_2811 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus fermentum IFO 3956 LAF_1625 -136 2.3 CTTGCATTTTTATTTGAT
Lactobacillus plantarum WCFS1 lp_0775 -139 4.1 TCTGCATAAAAATTCTAT
Lactobacillus reuteri JCM 1112 LAR_0702 -164 4.7 ATTAAATAATTATTCTAT
Lactobacillus rhamnosus GG LGG_02817 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0306 -47 3.5 AATGAATAGATTATGAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1459 -73 3.8 ATTGCATATTTAATCAAA
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