Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Rex regulog to Lactobacillus plantarum WCFS1

Reference regulog properties
Source regulog: Rex - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus plantarum WCFS1
Orthologous TF(s) lp_0725
Regulated genes 5
Built upon 68 sites [see more]
Predicted regulatory interactions in Lactobacillus plantarum WCFS1
Locus tag Position Score Sequence
Position: -205
Score: 4.9
Sequence: TTGTGAATATTATAACAG
Position: -45
Score: 5
Sequence: TTGTGAAATAAGAAACAA
Locus tag: lp_0329
lp_0329 -205 4.9 TTGTGAATATTATAACAG
-45 5 TTGTGAAATAAGAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10)
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1901 -99 5.4 TTGTGAATTAATTCACGA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0146 -156 4.6 ATGTGATTTATTATACAA
-35 4.7 TTGTTAATAAATGAGCAA
Oenococcus oeni PSU-1 OEOE_1248 -107 4.6 TAGTGATTTTTTTTACAA
-49 5.6 TTGTTAATAAGTTCACAA
Position: -116
Score: 5
Sequence: TTGTGAAAAATATAATTA
Locus tag: lp_3051
lp_3051 -116 5 TTGTGAAAAATATAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dhaT
Ortholog function: 1,3-propanediol dehydrogenase (EC 1.1.1.202)
Lactobacillus plantarum WCFS1 lp_3051 -116 5 TTGTGAAAAATATAATTA
Lactobacillus reuteri JCM 1112 LAR_0029 -164 5.2 TTGTGAATATTATGACAA
Lactobacillus sakei subsp. sakei 23K LSA0122 -35 5.3 TTGTGAAATAATTCAGAA
Position: -36
Score: 5
Sequence: TTGTGAATATAAACACAT
Locus tag: lp_3449
lp_3449 -36 5 TTGTGAATATAAACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: noxE
Ortholog function: NADH oxidase (EC 1.6.99.3)
Lactobacillus plantarum WCFS1 lp_3449 -36 5 TTGTGAATATAAACACAT
Lactobacillus reuteri JCM 1112 LAR_0064 -245 5.1 TTGTGAGTAATTTTACAA
-35 4.6 TTGTGAAAATCAGAACAT
Position: -43
Score: 5.5
Sequence: TTGTAAATTAATTCACAA
Locus tag: lp_3662
lp_3662 -43 5.5 TTGTAAATTAATTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10)
Lactobacillus acidophilus NCFM LBA0461 -45 5.5 TTGTAAATTAGTTCACAA
Lactobacillus brevis ATCC 367 LVIS_0119 -105 5 TTGTGATTTTTTTAACAT
-47 4.8 TCGTGAAGAAGTTAACAA
Lactobacillus casei ATCC 334 LSEI_0775 -106 5 TCGTGAAAAAATTCACCA
-85 4.7 TTGTTTACAAAATCACAA
-49 5.4 TTGTGAAATGGTTAACAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1581 -47 5.2 TTGAGAAATTGATCACAA
Lactobacillus fermentum IFO 3956 LAF_0277 -151 4.9 TTGAAATTTAATTCACAA
-85 4.5 TTGTTGACTAAATCACAA
Lactobacillus johnsonii NCC 533 LJ1766 -289 4.8 TTATTAAAATTTTAACAT
-191 5.3 TTGTGAAATATTTTTCAA
-104 5 TTGTAAAAAGATGCACAA
Lactobacillus plantarum WCFS1 lp_3662 -43 5.5 TTGTAAATTAATTCACAA
Lactobacillus reuteri JCM 1112 LAR_0310 -238 4.4 TTGTGAAATAGACTTCAA
-104 5.1 TTGTTTAAATGTTCACAA
Lactobacillus rhamnosus GG LGG_00757 -105 5.2 TCGTGAAAAAGTTCACTA
-84 4.7 TTGTTTACAAAATCACAA
-48 5.4 TTGTGAAATGGTTAACAA
Lactobacillus sakei subsp. sakei 23K LSA0379 -99 5.1 CTGTTAAAAAAATCACAA
-42 5.2 TTGTTAATTAAATCACAT
© 2009-2020 RegPrecise