Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Rex regulog to Lactobacillus brevis ATCC 367

Reference regulog properties
Source regulog: Rex - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus brevis ATCC 367
Orthologous TF(s) LVIS_0616
Regulated genes 7
Built upon 68 sites [see more]
Predicted regulatory interactions in Lactobacillus brevis ATCC 367
Locus tag Position Score Sequence
Position: -105
Score: 5
Sequence: TTGTGATTTTTTTAACAT
Position: -47
Score: 4.8
Sequence: TCGTGAAGAAGTTAACAA
Locus tag: LVIS_0119
LVIS_0119 -105 5 TTGTGATTTTTTTAACAT
-47 4.8 TCGTGAAGAAGTTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10)
Lactobacillus acidophilus NCFM LBA0461 -45 5.5 TTGTAAATTAGTTCACAA
Lactobacillus brevis ATCC 367 LVIS_0119 -105 5 TTGTGATTTTTTTAACAT
-47 4.8 TCGTGAAGAAGTTAACAA
Lactobacillus casei ATCC 334 LSEI_0775 -106 5 TCGTGAAAAAATTCACCA
-85 4.7 TTGTTTACAAAATCACAA
-49 5.4 TTGTGAAATGGTTAACAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1581 -47 5.2 TTGAGAAATTGATCACAA
Lactobacillus fermentum IFO 3956 LAF_0277 -151 4.9 TTGAAATTTAATTCACAA
-85 4.5 TTGTTGACTAAATCACAA
Lactobacillus johnsonii NCC 533 LJ1766 -289 4.8 TTATTAAAATTTTAACAT
-191 5.3 TTGTGAAATATTTTTCAA
-104 5 TTGTAAAAAGATGCACAA
Lactobacillus plantarum WCFS1 lp_3662 -43 5.5 TTGTAAATTAATTCACAA
Lactobacillus reuteri JCM 1112 LAR_0310 -238 4.4 TTGTGAAATAGACTTCAA
-104 5.1 TTGTTTAAATGTTCACAA
Lactobacillus rhamnosus GG LGG_00757 -105 5.2 TCGTGAAAAAGTTCACTA
-84 4.7 TTGTTTACAAAATCACAA
-48 5.4 TTGTGAAATGGTTAACAA
Lactobacillus sakei subsp. sakei 23K LSA0379 -99 5.1 CTGTTAAAAAAATCACAA
-42 5.2 TTGTTAATTAAATCACAT
Position: -137
Score: 4.4
Sequence: TTGCAAATTCTTTCACAA
Locus tag: LVIS_0616
LVIS_0616 -137 4.4 TTGCAAATTCTTTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rex
Ortholog function: Redox-sensitive transcriptional regulator Rex
Lactobacillus brevis ATCC 367 LVIS_0616 -137 4.4 TTGCAAATTCTTTCACAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1498 -141 4.9 TTGTGAAAAAGTTCAATA
Lactobacillus reuteri JCM 1112 LAR_0341 -157 4.7 TTGTATTTTAGTTCACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1214 -33 5 ATGTTAAATATTTCACGA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1774 -39 4.9 TTATGCAAAAGTTCACAA
Position: -36
Score: 5.2
Sequence: TTGTGAATATTATATCAA
Locus tag: LVIS_0911
LVIS_0911 -36 5.2 TTGTGAATATTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhB2
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1), Zn-dependent
Lactobacillus brevis ATCC 367 LVIS_0911 -36 5.2 TTGTGAATATTATATCAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1748 -64 5.1 TTGAGAAAGAATTCACAA
Position: -79
Score: 4.8
Sequence: TTGTGCAAAATTTCACTT
Locus tag: LVIS_1019
LVIS_1019 -79 4.8 TTGTGCAAAATTTCACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhB1
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1), Zn-dependent
Lactobacillus brevis ATCC 367 LVIS_1019 -79 4.8 TTGTGCAAAATTTCACTT
Lactobacillus sakei subsp. sakei 23K LSA1702 -73 5.3 TTGTGAAAAAAATCATAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1919 -36 5.2 TTGTAAATAAGTTCACAT
Oenococcus oeni PSU-1 OEOE_0527 -176 4.9 TTGTAAATTTTTGTACAA
Position: -44
Score: 5.4
Sequence: TTGTGAAAATTATCTCAA
Locus tag: LVIS_1558
LVIS_1558 -44 5.4 TTGTGAAAATTATCTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: noxE
Ortholog function: NADH oxidase (EC 1.6.99.3)
Lactobacillus brevis ATCC 367 LVIS_1558 -44 5.4 TTGTGAAAATTATCTCAA
Lactobacillus casei ATCC 334 LSEI_0285 -109 5 TTAATAAATATTTCACAA
-40 5 TTGTGAAAAGGTTATCAA
Lactobacillus rhamnosus GG LGG_00325 -41 5.3 TTGTGAAATTTTTATCAA
Lactobacillus sakei subsp. sakei 23K LSA0802 -193 4.7 TTTATAATAAAATCACAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_2067 -114 4.6 TCGTGTTAAATATCACAA
Position: -37
Score: 5.3
Sequence: TTGTGAAAATAATCACGA
Locus tag: LVIS_2165
LVIS_2165 -37 5.3 TTGTGAAAATAATCACGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gldA
Ortholog function: Glycerol dehydrogenase (EC 1.1.1.6)
Lactobacillus brevis ATCC 367 LVIS_2165 -37 5.3 TTGTGAAAATAATCACGA
Lactobacillus fermentum IFO 3956 LAF_0639 -39 5 TTGTTAAAACATACACAA
Lactobacillus reuteri JCM 1112 LAR_1724 -38 4.8 TTGTTAACTTATACACAA
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