Regulog GalR - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Galactosides utilization; Galactose utilization |
| Effector: | Galactose |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By TF family - LacI
- By effector - Galactose
- By pathway - Galactosides utilization
- By pathway - Galactose utilization
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus brevis ATCC 367 | 7 | 3 |
| Lactobacillus casei ATCC 334 | 5 | 1 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus fermentum IFO 3956 | 2 | 1 |
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | 8 | 3 |
| Lactobacillus reuteri JCM 1112 | 7 | 4 |
| Lactobacillus rhamnosus GG | 5 | 1 |
| Lactobacillus sakei subsp. sakei 23K | 7 | 3 |
| Lactobacillus salivarius subsp. salivarius UCC118 | 5 | 3 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 4 | 1 |
| Oenococcus oeni PSU-1 | 7 | 1 |
| Pediococcus pentosaceus ATCC 25745 | 8 | 5 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| lacL |
Gene: LBA1467: Beta-galactosidase large subunit (EC 3.2.1.23) |
Gene: LVIS_2259: Beta-galactosidase large subunit (EC 3.2.1.23) |
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Gene: LBUL_1114: Beta-galactosidase large subunit (EC 3.2.1.23) / Beta-galactosidase small subunit (EC 3.2.1.23) |
*
Lactobacillus fermentum IFO 3956 Site: position = -91 score = 5.51933 sequence = TAATATTTACTAAACTTTT Gene: LAF_0247: Beta-galactosidase large subunit (EC 3.2.1.23) |
Gene: lhv_1549: Beta-galactosidase large subunit (EC 3.2.1.23) |
Gene: LJ0855: Beta-galactosidase large subunit (EC 3.2.1.23) |
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Lactobacillus plantarum WCFS1 Site: position = -266 score = 5.86403 sequence = ATAGTTTTACTAAAATTTT Gene: lp_3483: Beta-galactosidase large subunit (EC 3.2.1.23) |
*
Lactobacillus reuteri JCM 1112 Site: position = -95 score = 4.8753 sequence = AAAATTTACGTAAATTTTA Gene: LAR_0276: Beta-galactosidase large subunit (EC 3.2.1.23) |
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Gene: LSA1711: Beta-galactosidase large subunit (EC 3.2.1.23) |
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Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -86 score = 5.49169 sequence = AATATTTTAGTAAAAAGTA Gene: LSL_0376: Beta-galactosidase large subunit (EC 3.2.1.23) / Beta-galactosidase small subunit (EC 3.2.1.23) |
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Pediococcus pentosaceus ATCC 25745 Site: position = -266 score = 6.17867 sequence = ATAATTTTACTAAAATTTT Site: position = -94 score = 5.13391 sequence = AAATTTTAACTAAAACAAC Gene: PEPE_0205: Beta-galactosidase large subunit (EC 3.2.1.23) |
Beta-galactosidase large subunit (EC 3.2.1.23) |
| lacM |
Gene: LBA1468: Beta-galactosidase small subunit (EC 3.2.1.23) |
Gene: LVIS_2258: Beta-galactosidase small subunit (EC 3.2.1.23) |
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Gene: LAF_0248: Beta-galactosidase small subunit (EC 3.2.1.23) |
Gene: lhv_1550: Beta-galactosidase small subunit (EC 3.2.1.23) |
Gene: LJ0854: Beta-galactosidase small subunit (EC 3.2.1.23) |
Gene: lp_3484: Beta-galactosidase small subunit (EC 3.2.1.23) |
Gene: LAR_0277: Beta-galactosidase small subunit (EC 3.2.1.23) |
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Gene: LSA1710: Beta-galactosidase small subunit (EC 3.2.1.23) |
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Gene: PEPE_0204: Beta-galactosidase small subunit (EC 3.2.1.23) |
Beta-galactosidase small subunit (EC 3.2.1.23) |
| CRON 2. | ||||||||||||||||
| OEOE_0356 |
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Oenococcus oeni PSU-1 Site: position = -231 score = 5.50887 sequence = AATATTTTAGTAAAGATTT Gene: OEOE_0307: Transposase, IS30 family |
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Transposase, IS30 family |
| LVIS_1906 |
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Lactobacillus brevis ATCC 367 Site: position = -222 score = 5.08976 sequence = ATTGATTTACTAAATTTTT Gene: LVIS_1906: Conserved hypothetical protein |
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Lactobacillus sakei subsp. sakei 23K Site: position = -111 score = 5.51027 sequence = AAAAGTTTAGTAAAATGAA Gene: LSA0184: Conserved hypothetical protein |
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Gene: OEOE_0306: Conserved hypothetical protein |
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Conserved hypothetical protein |
| lacS |
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Gene: LVIS_1905: Lactose and galactose permease, GPH translocator family |
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Gene: LSA0185: Lactose and galactose permease, GPH translocator family |
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Gene: OEOE_0305: Lactose and galactose permease, GPH translocator family |
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Lactose and galactose permease, GPH translocator family |
| galK |
Gene: LBA1459: Galactokinase (EC 2.7.1.6) |
*
Lactobacillus brevis ATCC 367 Site: position = -38 score = 5.86403 sequence = AAAACTTTACTAAAAATTT Gene: LVIS_1904: Galactokinase (EC 2.7.1.6) |
*
Lactobacillus casei ATCC 334 Site: position = -79 score = 5.80407 sequence = TTATTTTTAGTAAAATAAA Gene: LSEI_0664: Galactokinase (EC 2.7.1.6) |
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Gene: LAF_1792: Galactokinase (EC 2.7.1.6) |
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Lactobacillus plantarum WCFS1 Site: position = -36 score = 5.95267 sequence = AAAATTTTAGTAAAACTAT Gene: lp_3482: Galactokinase (EC 2.7.1.6) |
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Lactobacillus reuteri JCM 1112 Site: position = -53 score = 4.90499 sequence = TTGTATTTAGTAAAAGTTT Gene: LAR_1662: Galactokinase (EC 2.7.1.6) |
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Lactobacillus rhamnosus GG Site: position = -78 score = 5.85359 sequence = TTAATTTTAGTAAAATAAA Gene: LGG_00653: Galactokinase (EC 2.7.1.6) |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -45 score = 5.46075 sequence = AAATGTTTAGTAAAATGAA Gene: LSA0764: Galactokinase (EC 2.7.1.6) |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -101 score = 5.78437 sequence = ATATTTTTAGTAAATTTTA Site: position = -79 score = 5.46075 sequence = AAAAGTTTACTAAAAAGTA Gene: LSL_0381: Galactokinase (EC 2.7.1.6) |
2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0883: Galactokinase (EC 2.7.1.6) Gene: LEUM_0883: Galactokinase (EC 2.7.1.6) |
Gene: OEOE_0304: Galactokinase (EC 2.7.1.6) |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -33 score = 6.26731 sequence = AAAATTTTAGTAAAATTAT Site: position = -193 score = 5.17056 sequence = AAAATTTAACCAAAATTAA Gene: PEPE_0206: Galactokinase (EC 2.7.1.6) |
Galactokinase (EC 2.7.1.6) |
| galT |
Gene: LBA1458: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: LVIS_1902: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: LSEI_0666: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
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Gene: LAF_1791: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
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Gene: lp_3480: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: LAR_1661: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: LGG_00655: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: LSA0766: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: LSL_0383: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0884: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) Gene: LEUM_0884: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: OEOE_0303: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Gene: PEPE_0208: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10) |
| galR |
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Gene: LVIS_1901: Galactose utilization transcriptional regulator GalR, LacI family |
Gene: LSEI_0667: Galactose utilization transcriptional regulator GalR, LacI family |
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Gene: LAF_1790: Galactose utilization transcriptional regulator GalR, LacI family |
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2
Lactobacillus plantarum WCFS1 Gene: lp_3488: Galactose utilization transcriptional regulator GalR, LacI family Gene: lp_3479: Galactose utilization transcriptional regulator GalR, LacI family |
*2
Lactobacillus reuteri JCM 1112 Gene: LAR_1660: Galactose utilization transcriptional regulator GalR, LacI family Site: position = -54 score = 5.54939 sequence = AAACGTTTACTAAAAATAT Gene: LAR_0856: Galactose utilization transcriptional regulator GalR, LacI family |
Gene: LGG_00656: Galactose utilization transcriptional regulator GalR, LacI family |
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Lactobacillus sakei subsp. sakei 23K Site: position = -101 score = 5.40378 sequence = AAACATTTACTAAAAAATC Gene: LSA0763: Galactose utilization transcriptional regulator GalR, LacI family |
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Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -89 score = 5.90543 sequence = TAAAATTTACTAAAAATAT Gene: LSL_0380: Galactose utilization transcriptional regulator GalR, LacI family |
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Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -106 score = 5.11966 sequence = TACTTTTTAGTAAATATTT Gene: LEUM_0881: Galactose utilization transcriptional regulator GalR, LacI family |
Gene: OEOE_0302: Galactose utilization transcriptional regulator GalR, LacI family |
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Pediococcus pentosaceus ATCC 25745 Site: position = -177 score = 5.1775 sequence = CAAAATTTTGTAAAAATAT Gene: PEPE_0201: Galactose utilization transcriptional regulator GalR, LacI family |
Galactose utilization transcriptional regulator GalR, LacI family |
| galM |
Gene: LBA1457: Aldose 1-epimerase (EC 5.1.3.3) |
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Lactobacillus brevis ATCC 367 Site: position = -84 score = 5.29823 sequence = CGAATTTTAGTAAAAAATT Gene: LVIS_1908: Aldose 1-epimerase (EC 5.1.3.3) |
Gene: LSEI_0668: Aldose 1-epimerase (EC 5.1.3.3) |
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Gene: lp_3487: Aldose 1-epimerase (EC 5.1.3.3) |
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Gene: LGG_00657: Aldose 1-epimerase (EC 5.1.3.3) |
Gene: LSA0767: Aldose 1-epimerase (EC 5.1.3.3) |
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Gene: OEOE_0301: Aldose 1-epimerase (EC 5.1.3.3) |
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Pediococcus pentosaceus ATCC 25745 Site: position = -89 score = 5.42754 sequence = TTATTTTAACTAAAATATT Gene: PEPE_0202: Aldose 1-epimerase (EC 5.1.3.3) |
Aldose 1-epimerase (EC 5.1.3.3) |
| galE |
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Gene: LVIS_1903: UDP-glucose 4-epimerase (EC 5.1.3.2) |
Gene: LSEI_0665: UDP-glucose 4-epimerase (EC 5.1.3.2) |
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Gene: lp_3481: UDP-glucose 4-epimerase (EC 5.1.3.2) |
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Gene: LGG_00654: UDP-glucose 4-epimerase (EC 5.1.3.2) |
2
Lactobacillus sakei subsp. sakei 23K Gene: LSA1280: UDP-glucose 4-epimerase (EC 5.1.3.2) Gene: LSA0765: UDP-glucose 4-epimerase (EC 5.1.3.2) |
Gene: LSL_0382: UDP-glucose 4-epimerase (EC 5.1.3.2) |
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Gene: PEPE_0207: UDP-glucose 4-epimerase (EC 5.1.3.2) |
UDP-glucose 4-epimerase (EC 5.1.3.2) |
| melA |
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Gene: lp_3485: Alpha-galactosidase (EC 3.2.1.22) |
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Lactobacillus reuteri JCM 1112 Site: position = -128 score = 5.42842 sequence = ATATTTTTAGTAAACGTTT Gene: LAR_0857: Alpha-galactosidase (EC 3.2.1.22) |
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Gene: LEUM_0882: Alpha-galactosidase (EC 3.2.1.22) |
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Alpha-galactosidase (EC 3.2.1.22) |
| lacS2 |
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Lactobacillus plantarum WCFS1 Site: position = -88 score = 5.70467 sequence = CAAATTTTACTAAAAATCA Gene: lp_3486: Lactose and galactose permease, GPH translocator family |
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Pediococcus pentosaceus ATCC 25745 Site: position = -108 score = 5.13166 sequence = ACTAATTTACTAAAATAAT Site: position = -85 score = 5.58529 sequence = CAAATTTTACTAAAAAACA Gene: PEPE_0203: Lactose and galactose permease, GPH translocator family |
Lactose and galactose permease, GPH translocator family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |