Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Rex regulog to Lactobacillus casei BL23

Reference regulog properties
Source regulog: Rex - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus casei BL23
Orthologous TF(s) LCABL_24270, LCABL_14800
Regulated genes 3
Built upon 68 sites [see more]
Predicted regulatory interactions in Lactobacillus casei BL23
Locus tag Position Score Sequence
Position: -109
Score: 5
Sequence: TTAATAAATATTTCACAA
Position: -40
Score: 5
Sequence: TTGTGAAAAGGTTATCAA
Locus tag: LCABL_02800
LCABL_02800 -109 5 TTAATAAATATTTCACAA
-40 5 TTGTGAAAAGGTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: noxE
Ortholog function: NADH oxidase (EC 1.6.99.3)
Lactobacillus brevis ATCC 367 LVIS_1558 -44 5.4 TTGTGAAAATTATCTCAA
Lactobacillus casei ATCC 334 LSEI_0285 -109 5 TTAATAAATATTTCACAA
-40 5 TTGTGAAAAGGTTATCAA
Lactobacillus rhamnosus GG LGG_00325 -41 5.3 TTGTGAAATTTTTATCAA
Lactobacillus sakei subsp. sakei 23K LSA0802 -193 4.7 TTTATAATAAAATCACAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_2067 -114 4.6 TCGTGTTAAATATCACAA
Position: -106
Score: 5
Sequence: TCGTGAAAAAATTCACCA
Position: -49
Score: 5.4
Sequence: TTGTGAAATGGTTAACAA
Locus tag: LCABL_08380
LCABL_08380 -106 5 TCGTGAAAAAATTCACCA
-49 5.4 TTGTGAAATGGTTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10)
Lactobacillus acidophilus NCFM LBA0461 -45 5.5 TTGTAAATTAGTTCACAA
Lactobacillus brevis ATCC 367 LVIS_0119 -105 5 TTGTGATTTTTTTAACAT
-47 4.8 TCGTGAAGAAGTTAACAA
Lactobacillus casei ATCC 334 LSEI_0775 -106 5 TCGTGAAAAAATTCACCA
-85 4.7 TTGTTTACAAAATCACAA
-49 5.4 TTGTGAAATGGTTAACAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1581 -47 5.2 TTGAGAAATTGATCACAA
Lactobacillus fermentum IFO 3956 LAF_0277 -151 4.9 TTGAAATTTAATTCACAA
-85 4.5 TTGTTGACTAAATCACAA
Lactobacillus johnsonii NCC 533 LJ1766 -289 4.8 TTATTAAAATTTTAACAT
-191 5.3 TTGTGAAATATTTTTCAA
-104 5 TTGTAAAAAGATGCACAA
Lactobacillus plantarum WCFS1 lp_3662 -43 5.5 TTGTAAATTAATTCACAA
Lactobacillus reuteri JCM 1112 LAR_0310 -238 4.4 TTGTGAAATAGACTTCAA
-104 5.1 TTGTTTAAATGTTCACAA
Lactobacillus rhamnosus GG LGG_00757 -105 5.2 TCGTGAAAAAGTTCACTA
-84 4.7 TTGTTTACAAAATCACAA
-48 5.4 TTGTGAAATGGTTAACAA
Lactobacillus sakei subsp. sakei 23K LSA0379 -99 5.1 CTGTTAAAAAAATCACAA
-42 5.2 TTGTTAATTAAATCACAT
Position: -39
Score: 4.8
Sequence: ATGTGAAAATAGTAACAA
Locus tag: LCABL_14800
LCABL_14800 -39 4.8 ATGTGAAAATAGTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rex2
Ortholog function: Redox-sensitive transcriptional regulator Rex paralog
Lactobacillus casei ATCC 334 LSEI_1250 -39 4.6 ATGTGAAAAGAGTAACAA
Lactobacillus rhamnosus GG LGG_01260 -39 4.8 ATGTGAAAATGGTAACAA
Lactobacillus sakei subsp. sakei 23K LSA0848 -77 5.1 ATATGAAAAAATTCACAA
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