Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of GlnR regulog to Lactobacillus casei BL23

Reference regulog properties
Source regulog: GlnR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus casei BL23
Orthologous TF(s) LCABL_18690
Regulated genes 3
Built upon 32 sites [see more]
Predicted regulatory interactions in Lactobacillus casei BL23
Locus tag Position Score Sequence
Position: -79
Score: 6
Sequence: ATGTCAGAAAAGCTTACAT
Locus tag: LCABL_18690
LCABL_18690 -79 6 ATGTCAGAAAAGCTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnR
Ortholog function: Nitrogen metabolism transcriptional regulator, MerR family
Lactobacillus brevis ATCC 367 LVIS_0991 -82 6.3 ATGTCAGAAAACCTAACAT
Lactobacillus casei ATCC 334 LSEI_1653 -79 6 ATGTCAGAAAAGCTTACAT
Lactobacillus plantarum WCFS1 lp_1580 -82 5.4 GTGTGATATTTTCTAACAT
Lactobacillus rhamnosus GG LGG_01697 -79 6 ATGTAAGAAAACCTTACAT
Lactobacillus sakei subsp. sakei 23K LSA1322 -77 6.3 ATGTCAGAAAACCTAACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0557 -83 5.4 GTGTAAGAAAATATTACAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0716 -80 5.9 ATGTTAGAAAACCTGACAC
Oenococcus oeni PSU-1 OEOE_0951 -67 5.7 ATGTTAGCTTTCCTAACAT
Pediococcus pentosaceus ATCC 25745 PEPE_0738 -81 6.2 ATGTTAGAAAATGTAACAT
Position: -160
Score: 5.3
Sequence: ATGTCAATTAATCTAACAT
Locus tag: LCABL_30530
LCABL_30530 -160 5.3 ATGTCAATTAATCTAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnP
Ortholog function: Glutamine ABC transporter, permease and substrate-binding protein
Lactobacillus casei ATCC 334 LSEI_2849 -172 5.3 ATGTCAATTAATCTAACAT
Lactobacillus rhamnosus GG LGG_02862 -256 6.1 ATGTAAGAAAAGCTAACAT
Position: -90
Score: 4.9
Sequence: TTGTCAGACTACCTAACAA
Locus tag: LCABL_30650
LCABL_30650 -90 4.9 TTGTCAGACTACCTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ansB
Ortholog function: Aspartate ammonia-lyase (EC 4.3.1.1)
Lactobacillus casei ATCC 334 LSEI_2863 -90 4.9 TTGTCAGACTACCTAACAA
Lactobacillus plantarum WCFS1 lp_2830 -44 5.6 ATGTTAGAAGATATAACAT
Lactobacillus rhamnosus GG LGG_02872 -90 5 TTGTTAGACTAGCTCACAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0153 -81 4.9 GTGTCATAAAACTTAACAA
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