Regulog GlnR - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By TF family - MerR
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus brevis ATCC 367 | 7 | 3 |
| Lactobacillus casei ATCC 334 | 6 | 4 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | 6 | 4 |
| Lactobacillus reuteri JCM 1112 | ||
| Lactobacillus rhamnosus GG | 6 | 4 |
| Lactobacillus sakei subsp. sakei 23K | 2 | 1 |
| Lactobacillus salivarius subsp. salivarius UCC118 | 10 | 5 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 8 | 4 |
| Oenococcus oeni PSU-1 | 3 | 2 |
| Pediococcus pentosaceus ATCC 25745 | 4 | 2 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| gluQ |
Gene: LBA0578: Glutamate ABC transporter, ATP-binding protein |
*
Lactobacillus brevis ATCC 367 Site: position = -260 score = 5.70621 sequence = GTGTTAGAATTTATAACAT Gene: LVIS_1775: Glutamate ABC transporter, ATP-binding protein |
Gene: LSEI_2022: Glutamate ABC transporter, ATP-binding protein |
Gene: LBUL_0458: Glutamate ABC transporter, ATP-binding protein |
|
Gene: lhv_0598: Glutamate ABC transporter, ATP-binding protein |
Gene: LJ0753: Glutamate ABC transporter, ATP-binding protein |
Gene: lp_0878: Glutamate ABC transporter, ATP-binding protein |
Gene: LAR_1420: Glutamate ABC transporter, ATP-binding protein |
Gene: LGG_02009: Glutamate ABC transporter, ATP-binding protein |
|
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -201 score = 5.42781 sequence = TTGTTAGATTTTCTAACAA Site: position = -161 score = 4.75879 sequence = ATGTAACCTAATATAACAT Gene: LSL_1446: Glutamate ABC transporter, ATP-binding protein |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -152 score = 5.58795 sequence = TTGTTATAAAACCTCACAT Gene: LEUM_1936: Glutamate ABC transporter, ATP-binding protein |
Gene: OEOE_1634: Glutamate ABC transporter, ATP-binding protein |
Gene: PEPE_0389: Glutamate ABC transporter, ATP-binding protein |
Glutamate ABC transporter, ATP-binding protein |
| gluH |
Gene: LBA0579: Glutamate ABC transporter, substrate-binding protein |
Gene: LVIS_1774: Glutamate ABC transporter, substrate-binding protein |
Gene: LSEI_2021: Glutamate ABC transporter, substrate-binding protein |
Gene: LBUL_0459: Glutamate ABC transporter, substrate-binding protein |
|
Gene: lhv_0599: Glutamate ABC transporter, substrate-binding protein |
Gene: LJ0754: Glutamate ABC transporter, substrate-binding protein |
Gene: lp_0881: Glutamate ABC transporter, substrate-binding protein |
Gene: LAR_1421: Glutamate ABC transporter, substrate-binding protein |
Gene: LGG_02008: Glutamate ABC transporter, substrate-binding protein |
|
Gene: LSL_1445: Glutamate ABC transporter, substrate-binding protein |
Gene: LEUM_1935: Glutamate ABC transporter, substrate-binding protein |
Gene: OEOE_1633: Glutamate ABC transporter, substrate-binding protein |
Gene: PEPE_0390: Glutamate ABC transporter, substrate-binding protein |
Glutamate ABC transporter, substrate-binding protein |
| gluM |
Gene: LBA0581: Glutamate ABC transporter, permease protein 1 |
Gene: LVIS_1773: Glutamate ABC transporter, permease protein 1 |
Gene: LSEI_2020: Glutamate ABC transporter, permease protein 1 |
Gene: LBUL_0460: Glutamate ABC transporter, permease protein 1 |
|
Gene: lhv_0600: Glutamate ABC transporter, permease protein 1 |
Gene: LJ0755: Glutamate ABC transporter, permease protein 1 |
Gene: lp_0882: Glutamate ABC transporter, permease protein 1 |
Gene: LAR_1422: Glutamate ABC transporter, permease protein 1 |
Gene: LGG_02007: Glutamate ABC transporter, permease protein 1 |
|
Gene: LSL_1444: Glutamate ABC transporter, permease protein 1 |
Gene: LEUM_1934: Glutamate ABC transporter, permease protein 1 |
Gene: OEOE_1632: Glutamate ABC transporter, permease protein 1 |
Gene: PEPE_0391: Glutamate ABC transporter, permease protein 1 |
Glutamate ABC transporter, permease protein 1 |
| gluP |
Gene: LBA0582: Glutamate ABC transporter, permease protein 2 |
Gene: LVIS_1772: Glutamate ABC transporter, permease protein 2 |
Gene: LSEI_2019: Glutamate ABC transporter, permease protein 2 |
Gene: LBUL_0461: Glutamate ABC transporter, permease protein 2 |
|
Gene: lhv_0601: Glutamate ABC transporter, permease protein 2 |
Gene: LJ0756: Glutamate ABC transporter, permease protein 2 |
Gene: lp_0883: Glutamate ABC transporter, permease protein 2 |
Gene: LAR_1423: Glutamate ABC transporter, permease protein 2 |
Gene: LGG_02006: Glutamate ABC transporter, permease protein 2 |
|
Gene: LSL_1443: Glutamate ABC transporter, permease protein 2 |
Gene: LEUM_1933: Glutamate ABC transporter, permease protein 2 |
Gene: OEOE_1631: Glutamate ABC transporter, permease protein 2 |
Gene: PEPE_0392: Glutamate ABC transporter, permease protein 2 |
Glutamate ABC transporter, permease protein 2 |
| CRON 2. | ||||||||||||||||
| glnR |
|
*
Lactobacillus brevis ATCC 367 Site: position = -82 score = 6.27404 sequence = ATGTCAGAAAACCTAACAT Gene: LVIS_0991: Nitrogen metabolism transcriptional regulator, MerR family |
*
Lactobacillus casei ATCC 334 Site: position = -79 score = 5.95751 sequence = ATGTCAGAAAAGCTTACAT Gene: LSEI_1653: Nitrogen metabolism transcriptional regulator, MerR family |
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*
Lactobacillus plantarum WCFS1 Site: position = -82 score = 5.42409 sequence = GTGTGATATTTTCTAACAT Gene: lp_1580: Nitrogen metabolism transcriptional regulator, MerR family |
|
*
Lactobacillus rhamnosus GG Site: position = -79 score = 5.99062 sequence = ATGTAAGAAAACCTTACAT Gene: LGG_01697: Nitrogen metabolism transcriptional regulator, MerR family |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -77 score = 6.27404 sequence = ATGTCAGAAAACCTAACAT Gene: LSA1322: Nitrogen metabolism transcriptional regulator, MerR family |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -83 score = 5.38921 sequence = GTGTAAGAAAATATTACAT Gene: LSL_0557: Nitrogen metabolism transcriptional regulator, MerR family |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -80 score = 5.89142 sequence = ATGTTAGAAAACCTGACAC Gene: LEUM_0716: Nitrogen metabolism transcriptional regulator, MerR family |
*
Oenococcus oeni PSU-1 Site: position = -67 score = 5.7377 sequence = ATGTTAGCTTTCCTAACAT Gene: OEOE_0951: Nitrogen metabolism transcriptional regulator, MerR family |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -81 score = 6.1696 sequence = ATGTTAGAAAATGTAACAT Gene: PEPE_0738: Nitrogen metabolism transcriptional regulator, MerR family |
Nitrogen metabolism transcriptional regulator, MerR family |
| glnA |
Gene: LBA1501: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: LVIS_0990: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: LSEI_1652: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: LBUL_1368: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: LAF_1275: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: lhv_1558: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: LJ1614: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: lp_1581: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: LAR_1135: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: LGG_01696: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: LSA1321: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: LSL_0558: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: LEUM_0717: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: OEOE_0952: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: PEPE_0739: Glutamine synthetase type I (EC 6.3.1.2) |
Glutamine synthetase type I (EC 6.3.1.2) |
| CRON 3. | ||||||||||||||||
| ansB |
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|
*
Lactobacillus casei ATCC 334 Site: position = -90 score = 4.88076 sequence = TTGTCAGACTACCTAACAA Gene: LSEI_2863: Aspartate ammonia-lyase (EC 4.3.1.1) |
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*
Lactobacillus plantarum WCFS1 Site: position = -44 score = 5.57736 sequence = ATGTTAGAAGATATAACAT Gene: lp_2830: Aspartate ammonia-lyase (EC 4.3.1.1) |
|
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Lactobacillus rhamnosus GG Site: position = -90 score = 4.97125 sequence = TTGTTAGACTAGCTCACAT Gene: LGG_02872: Aspartate ammonia-lyase (EC 4.3.1.1) |
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|
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -81 score = 4.86158 sequence = GTGTCATAAAACTTAACAA Gene: LEUM_0153: Aspartate ammonia-lyase (EC 4.3.1.1) |
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Aspartate ammonia-lyase (EC 4.3.1.1) |
| CRON 4. | ||||||||||||||||
| glnP |
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|
*
Lactobacillus casei ATCC 334 Site: position = -172 score = 5.33503 sequence = ATGTCAATTAATCTAACAT Gene: LSEI_2849: Glutamine ABC transporter, permease and substrate-binding protein |
Gene: LBUL_2019: Glutamine ABC transporter, permease and substrate-binding protein |
Gene: LAF_0069: Glutamine ABC transporter, permease and substrate-binding protein |
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*
Lactobacillus plantarum WCFS1 Site: position = -54 score = 5.49468 sequence = ATGTTATATTTTATGACAT Gene: lp_0802: Glutamine ABC transporter, permease and substrate-binding protein |
Gene: LAR_0092: Glutamine ABC transporter, permease and substrate-binding protein |
*
Lactobacillus rhamnosus GG Site: position = -256 score = 6.08519 sequence = ATGTAAGAAAAGCTAACAT Gene: LGG_02862: Glutamine ABC transporter, permease and substrate-binding protein |
Gene: LSA1497: Glutamine ABC transporter, permease and substrate-binding protein |
*2
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -44 score = 4.56029 sequence = ATGAGATATATTTTAACAT Gene: LSL_0062: Glutamine ABC transporter, permease and substrate-binding protein Site: position = -157 score = 4.43552 sequence = TTGTCACTTTATATAACAT Gene: LSL_0581: Glutamine ABC transporter, permease and substrate-binding protein |
Gene: LEUM_0438: Glutamine ABC transporter, permease and substrate-binding protein |
|
*
Pediococcus pentosaceus ATCC 25745 Site: position = -34 score = 5.81956 sequence = ATGTTAGGTTATCTAACAT Gene: PEPE_1068: Glutamine ABC transporter, permease and substrate-binding protein |
Glutamine ABC transporter, permease and substrate-binding protein |
| glnQ |
|
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Gene: LSEI_2848: Glutamine ABC transporter, ATP-binding protein |
Gene: LBUL_2020: Glutamine ABC transporter, ATP-binding protein |
Gene: LAF_0070: Glutamine ABC transporter, ATP-binding protein |
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Gene: lp_0803: Glutamine ABC transporter, ATP-binding protein |
Gene: LAR_0093: Glutamine ABC transporter, ATP-binding protein |
Gene: LGG_02861: Glutamine ABC transporter, ATP-binding protein |
Gene: LSA1496: Glutamine ABC transporter, ATP-binding protein |
Gene: LSL_0582: Glutamine ABC transporter, ATP-binding protein |
Gene: LEUM_0439: Glutamine ABC transporter, ATP-binding protein |
|
Gene: PEPE_1067: Glutamine ABC transporter, ATP-binding protein |
Glutamine ABC transporter, ATP-binding protein |
| CRON 5. | ||||||||||||||||
| nrgA |
Gene: LBA0473: Ammonium transporter |
*
Lactobacillus brevis ATCC 367 Site: position = -42 score = 6.02549 sequence = GTGTTAGAATTCCTAACAT Site: position = -177 score = 5.28167 sequence = ATGTCATAAAAATTAACAT Gene: LVIS_0844: Ammonium transporter |
*
Lactobacillus casei ATCC 334 Site: position = -173 score = 4.73547 sequence = ATGTCACATAAGCTAACGC Gene: LSEI_0653: Ammonium transporter |
Gene: LBUL_1541: Ammonium transporter |
Gene: LAF_1683: Ammonium transporter |
Gene: lhv_2090: Ammonium transporter |
|
*
Lactobacillus plantarum WCFS1 Site: position = -46 score = 6.21067 sequence = ATGTTATAATTTCTAACAT Gene: lp_0349: Ammonium transporter |
Gene: LAR_1328: Ammonium transporter |
*
Lactobacillus rhamnosus GG Site: position = -174 score = 5.36855 sequence = ATGTTATATAAGCTGACGT Gene: LGG_00633: Ammonium transporter |
|
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -94 score = 5.37565 sequence = ATGTCATAAAAAGTTACAT Site: position = -41 score = 5.38035 sequence = ATGTTATAATTTTTGACAT Gene: LSL_0235: Ammonium transporter |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -89 score = 5.34273 sequence = ATGTAAGAAAAGCTACCAC Gene: LEUM_0776: Ammonium transporter |
*
Oenococcus oeni PSU-1 Site: position = -62 score = 4.80128 sequence = TTGTTATATTAGTTAACAC Gene: OEOE_1679: Ammonium transporter |
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Ammonium transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |