Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PadR regulog to Lactobacillus plantarum WCFS1

Reference regulog properties
Source regulog: PadR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: PadR
Regulation mode: repressor
Biological process: Phenolic acid stress response
Effector: p-Coumaric acid; Ferulic acid
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus plantarum WCFS1
Orthologous TF(s) lp_3079, lp_3664
Regulated genes 2
Built upon 6 sites [see more]
Predicted regulatory interactions in Lactobacillus plantarum WCFS1
Locus tag Position Score Sequence
Position: -80
Score: 6.9
Sequence: AATCATGTAATTTATTACATGTTT
Locus tag: lp_3664
lp_3664 -80 6.9 AATCATGTAATTTATTACATGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: padR
Ortholog function: Phenolic acid stress response transcriptional regulator PadR, PadR family
Lactobacillus brevis ATCC 367 LVIS_0214 -208 7.1 GAACATGTAATTAATTACATGTTT
Lactobacillus plantarum WCFS1 lp_3664 -80 6.9 AATCATGTAATTTATTACATGTTT
Pediococcus pentosaceus ATCC 25745 PEPE_0492 7 6.4 AAACTTTTAAAACTTTAGATGACT
Position: -59
Score: 7.5
Sequence: AAACATGTAATAAATTACATGATT
Locus tag: lp_3665
lp_3665 -59 7.5 AAACATGTAATAAATTACATGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: padC
Ortholog function: Phenolic acid decarboxylase (EC 4.1.1.-)
Lactobacillus brevis ATCC 367 LVIS_0213 -48 7.1 AAACATGTAATTAATTACATGTTC
Lactobacillus plantarum WCFS1 lp_3665 -59 7.5 AAACATGTAATAAATTACATGATT
Lactobacillus sakei subsp. sakei 23K LSA1701 -41 7.2 AAACATGTAATTAATTACATGATA
Pediococcus pentosaceus ATCC 25745 PEPE_0491 7 6.4 AAACTTTTAAAACTTTAGATGACT