Regulog AgaR2 - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | N-acetylgalactosamine utilization |
| Effector: | N-acetylgalactosamine |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By TF family - GntR/Others
- By effector - N-acetylgalactosamine
- By pathway - N-acetylgalactosamine utilization
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus brevis ATCC 367 | ||
| Lactobacillus casei ATCC 334 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus helveticus DPC 4571 | 2 | 1 |
| Lactobacillus johnsonii NCC 533 | 7 | 2 |
| Lactobacillus plantarum WCFS1 | ||
| Lactobacillus reuteri JCM 1112 | ||
| Lactobacillus rhamnosus GG | 8 | 1 |
| Lactobacillus sakei subsp. sakei 23K | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | ||
| Oenococcus oeni PSU-1 | ||
| Pediococcus pentosaceus ATCC 25745 | 8 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| gadF |
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Gene: LJ0122: Predicted galactosamine disaccharide-specific PTS, EIIA component (EC 2.7.1.69) |
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Gene: LGG_00340: Predicted galactosamine disaccharide-specific PTS, EIIA component (EC 2.7.1.69) |
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Gene: OEOE_0382: Predicted galactosamine disaccharide-specific PTS, EIIA component (EC 2.7.1.69) |
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Pediococcus pentosaceus ATCC 25745 Site: position = -117 score = 5.62187 sequence = AACTGGTACCAACCAGTT Gene: PEPE_1761: Predicted galactosamine disaccharide-specific PTS, EIIA component (EC 2.7.1.69) |
Predicted galactosamine disaccharide-specific PTS, EIIA component (EC 2.7.1.69) |
| LJ0015 |
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Gene: LJ0015: Conserved hypothetical protein |
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Gene: PEPE_1760: Conserved hypothetical protein |
Conserved hypothetical protein |
| gadV |
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Lactobacillus johnsonii NCC 533 Site: position = -97 score = 5.75785 sequence = AAGTGGTTGCAACCAGTT Gene: LJ0119: Predicted galactosamine disaccharide-specific PTS, EIIB component (EC 2.7.1.69) |
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Gene: LGG_00337: Predicted galactosamine disaccharide-specific PTS, EIIB component (EC 2.7.1.69) |
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Gene: OEOE_0379: Predicted galactosamine disaccharide-specific PTS, EIIB component (EC 2.7.1.69) |
Gene: PEPE_1759: Predicted galactosamine disaccharide-specific PTS, EIIB component (EC 2.7.1.69) |
Predicted galactosamine disaccharide-specific PTS, EIIB component (EC 2.7.1.69) |
| gadW |
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Gene: LJ0120: Predicted galactosamine disaccharide-specific PTS, EIIC component (EC 2.7.1.69) |
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Gene: LGG_00338: Predicted galactosamine disaccharide-specific PTS, EIIC component (EC 2.7.1.69) |
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Gene: OEOE_0380: Predicted galactosamine disaccharide-specific PTS, EIIC component (EC 2.7.1.69) |
Gene: PEPE_1758: Predicted galactosamine disaccharide-specific PTS, EIIC component (EC 2.7.1.69) |
Predicted galactosamine disaccharide-specific PTS, EIIC component (EC 2.7.1.69) |
| gadE |
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Gene: LJ0121: Predicted galactosamine disaccharide-specific PTS, EIID component (EC 2.7.1.69) |
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Gene: LGG_00339: Predicted galactosamine disaccharide-specific PTS, EIID component (EC 2.7.1.69) |
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Gene: OEOE_0381: Predicted galactosamine disaccharide-specific PTS, EIID component (EC 2.7.1.69) |
Gene: PEPE_1757: Predicted galactosamine disaccharide-specific PTS, EIID component (EC 2.7.1.69) |
Predicted galactosamine disaccharide-specific PTS, EIID component (EC 2.7.1.69) |
| agaR2 |
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Lactobacillus helveticus DPC 4571 Site: position = -85 score = 6.03138 sequence = AACTGGTTATAACCACTT Site: position = -31 score = 6.00772 sequence = AAGTGGTACTAACCAGTT Gene: lhv_0513: N-acetylgalactosamine utilization transcriptional regulator AgaR2, GntR family |
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Lactobacillus johnsonii NCC 533 Site: position = -40 score = 5.75909 sequence = AGGTGGTACTAACCAGTT Gene: LJ0116: N-acetylgalactosamine utilization transcriptional regulator AgaR2, GntR family |
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Lactobacillus rhamnosus GG Site: position = -30 score = 4.52874 sequence = ATGTGGTTGGTACCACGT Gene: LGG_00332: N-acetylgalactosamine utilization transcriptional regulator AgaR2, GntR family |
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Gene: PEPE_1756: N-acetylgalactosamine utilization transcriptional regulator AgaR2, GntR family |
N-acetylgalactosamine utilization transcriptional regulator AgaR2, GntR family |
| agaS |
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Gene: LJ0117: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
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Gene: LGG_00333: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
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Gene: PEPE_1755: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
| agaA |
Gene: LBA0144: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Gene: LBUL_0171: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Gene: lhv_0514: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: LJ0118: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Gene: LGG_00334: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Gene: PEPE_1754: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| bgaC |
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Gene: LGG_00336: Beta-galactosidase (EC 3.2.1.23) |
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Beta-galactosidase (EC 3.2.1.23) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |