Regulog AgaR2 - Lactobacillaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	N-acetylgalactosamine utilization
Effector:	N-acetylgalactosamine
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Lactobacillaceae
By TF family - GntR/Others
By effector - N-acetylgalactosamine
By pathway - N-acetylgalactosamine utilization

Statistics of regulated genes
Genome	Genes	Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571	2	1
Lactobacillus johnsonii NCC 533	7	2
Lactobacillus plantarum WCFS1
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG	8	1
Lactobacillus sakei subsp. sakei 23K
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745	8	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
gadF	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533 Gene: LJ0122: Predicted galactosamine disaccharide-specific PTS, EIIA component (EC 2.7.1.69)	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_00340: Predicted galactosamine disaccharide-specific PTS, EIIA component (EC 2.7.1.69)	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1 Gene: OEOE_0382: Predicted galactosamine disaccharide-specific PTS, EIIA component (EC 2.7.1.69)	* Pediococcus pentosaceus ATCC 25745 Site: position = -117 score = 5.62187 sequence = AACTGGTACCAACCAGTT Gene: PEPE_1761: Predicted galactosamine disaccharide-specific PTS, EIIA component (EC 2.7.1.69)	Predicted galactosamine disaccharide-specific PTS, EIIA component (EC 2.7.1.69)
LJ0015	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533 Gene: LJ0015: Conserved hypothetical protein	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1760: Conserved hypothetical protein	Conserved hypothetical protein
gadV	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	* Lactobacillus johnsonii NCC 533 Site: position = -97 score = 5.75785 sequence = AAGTGGTTGCAACCAGTT Gene: LJ0119: Predicted galactosamine disaccharide-specific PTS, EIIB component (EC 2.7.1.69)	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_00337: Predicted galactosamine disaccharide-specific PTS, EIIB component (EC 2.7.1.69)	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1 Gene: OEOE_0379: Predicted galactosamine disaccharide-specific PTS, EIIB component (EC 2.7.1.69)	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1759: Predicted galactosamine disaccharide-specific PTS, EIIB component (EC 2.7.1.69)	Predicted galactosamine disaccharide-specific PTS, EIIB component (EC 2.7.1.69)
gadW	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533 Gene: LJ0120: Predicted galactosamine disaccharide-specific PTS, EIIC component (EC 2.7.1.69)	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_00338: Predicted galactosamine disaccharide-specific PTS, EIIC component (EC 2.7.1.69)	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1 Gene: OEOE_0380: Predicted galactosamine disaccharide-specific PTS, EIIC component (EC 2.7.1.69)	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1758: Predicted galactosamine disaccharide-specific PTS, EIIC component (EC 2.7.1.69)	Predicted galactosamine disaccharide-specific PTS, EIIC component (EC 2.7.1.69)
gadE	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533 Gene: LJ0121: Predicted galactosamine disaccharide-specific PTS, EIID component (EC 2.7.1.69)	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_00339: Predicted galactosamine disaccharide-specific PTS, EIID component (EC 2.7.1.69)	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1 Gene: OEOE_0381: Predicted galactosamine disaccharide-specific PTS, EIID component (EC 2.7.1.69)	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1757: Predicted galactosamine disaccharide-specific PTS, EIID component (EC 2.7.1.69)	Predicted galactosamine disaccharide-specific PTS, EIID component (EC 2.7.1.69)
agaR2	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	* Lactobacillus helveticus DPC 4571 Site: position = -85 score = 6.03138 sequence = AACTGGTTATAACCACTT Site: position = -31 score = 6.00772 sequence = AAGTGGTACTAACCAGTT Gene: lhv_0513: N-acetylgalactosamine utilization transcriptional regulator AgaR2, GntR family	* Lactobacillus johnsonii NCC 533 Site: position = -40 score = 5.75909 sequence = AGGTGGTACTAACCAGTT Gene: LJ0116: N-acetylgalactosamine utilization transcriptional regulator AgaR2, GntR family	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	* Lactobacillus rhamnosus GG Site: position = -30 score = 4.52874 sequence = ATGTGGTTGGTACCACGT Gene: LGG_00332: N-acetylgalactosamine utilization transcriptional regulator AgaR2, GntR family	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1756: N-acetylgalactosamine utilization transcriptional regulator AgaR2, GntR family	N-acetylgalactosamine utilization transcriptional regulator AgaR2, GntR family
agaS	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533 Gene: LJ0117: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_00333: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1755: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
agaA	Lactobacillus acidophilus NCFM Gene: LBA0144: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_0171: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571 Gene: lhv_0514: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)	Lactobacillus johnsonii NCC 533 Gene: LJ0118: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_00334: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1754: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)	N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
bgaC	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_00336: Beta-galactosidase (EC 3.2.1.23)	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Beta-galactosidase (EC 3.2.1.23)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog AgaR2 - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --