Propagation of NagR regulog to Lactobacillus acidophilus NCFM
| Source regulog: | NagR - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine-6-phosphate |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus acidophilus NCFM |
| Orthologous TF(s) | LBA0516 |
| Regulated genes | 2 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -52
Score: 4.4 Sequence: AAAATAAACTAGTCCATTAA
Position: -28
Score: 4.2 Sequence: ATATTGAACTAGACCAAAGG
Locus tag: LBA0462
|
||||
| LBA0462 | -52 | 4.4 | AAAATAAACTAGTCCATTAA | |
| -28 | 4.2 | ATATTGAACTAGACCAAAGG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glmS | ||||
| Ortholog function: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) | ||||
| Lactobacillus acidophilus NCFM | LBA0462 | -28 | 4.2 | ATATTGAACTAGACCAAAGG |
| Lactobacillus brevis ATCC 367 | LVIS_0687 | -106 | 5.1 | ATTTCAGTCTATACCAATTT |
| Lactobacillus casei ATCC 334 | LSEI_1019 | -159 | 5.3 | AAATTAATATAGACCAATAT |
| -48 | 5 | AAATCTGTCTAAACCAATTT | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_0440 | -29 | 4.5 | AAATTGAACTAGACCAAAGG |
| Lactobacillus fermentum IFO 3956 | LAF_0382 | -47 | 5.1 | GAATTTATCTATACCAATTT |
| Lactobacillus helveticus DPC 4571 | lhv_0491 | -131 | 5.1 | AAAATTGATTATACCAATTT |
| Lactobacillus johnsonii NCC 533 | LJ1581 | -130 | 5 | CTTTTGATATAGACCAATTA |
| Lactobacillus reuteri JCM 1112 | LAR_0405 | -134 | 4.6 | TAAATCATATAGACCAATCT |
| Lactobacillus rhamnosus GG | LGG_00983 | -47 | 4.5 | AAACCTGTCTAAACCAATTT |
| Lactobacillus sakei subsp. sakei 23K | LSA1355 | -114 | 5.4 | TAATTGAAATATACCAATAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1627 | -58 | 5 | ATCAAGGTCTATACCAATTT |
| Oenococcus oeni PSU-1 | OEOE_0635 | -113 | 4.8 | TTAATGGCCTATACCAATGT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0478 | -124 | 5 | CATTTGATATATACCGATTT |
|
Position: -57
Score: 5.7 Sequence: AAAATGGTCTATTCCATTTT
Position: -37
Score: 5 Sequence: ATAATGGACTAGACCATTAA
Locus tag: LBA1948
|
||||
| LBA1948 | -57 | 5.7 | AAAATGGTCTATTCCATTTT | |
| -37 | 5 | ATAATGGACTAGACCATTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagB | ||||
| Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) | ||||
| Lactobacillus acidophilus NCFM | LBA1948 | -57 | 5.7 | AAAATGGTCTATTCCATTTT |
| -37 | 5 | ATAATGGACTAGACCATTAA | ||
| Lactobacillus casei ATCC 334 | LSEI_2889 | -77 | 4.5 | ATTACGGTATAGACCACTAT |
| -34 | 4.7 | ACATTGGACTAGACCAGATA | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_2010 | -53 | 5.6 | AAAATGGACTATACCAATAT |
| Lactobacillus helveticus DPC 4571 | lhv_2077 | -54 | 5.7 | AAAATGGTCTATTCCATTTT |
| -34 | 4.6 | ATAATGGACTAGACCAGTAA | ||
| Lactobacillus rhamnosus GG | LGG_02913 | -78 | 5.2 | AATTAGGTATAGACCATTGT |
| -35 | 4.9 | ATATTGGACTAGACCAGATA | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1465 | -92 | 5.1 | TAAATGGTATAGACCATGAA |
| -39 | 5.4 | TAATTGGTATAGACCAAAAC | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0354 | -50 | 5.1 | ATATTGGTATAGACCAAAAC |
| -35 | 5.8 | AAAACGGTATAGACCAATTT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0335 | -60 | 5.1 | ATTTTGGTTTAGACCATTTT |
| -39 | 5.5 | TAATTGGACTATACCAAAAA | ||