Propagation of NrdR regulog to Lactobacillus fermentum IFO 3956
| Source regulog: | NrdR - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus fermentum IFO 3956 |
| Orthologous TF(s) | LAF_1314 |
| Regulated genes | 2 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -99
Score: 4.7 Sequence: CCACAAGATCTTGTAA
Position: -68
Score: 5.3 Sequence: AAACTATATGTTGTGT
Locus tag: LAF_1376
|
||||
| LAF_1376 | -99 | 4.7 | CCACAAGATCTTGTAA | |
| -68 | 5.3 | AAACTATATGTTGTGT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdD | ||||
| Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) | ||||
| Lactobacillus acidophilus NCFM | LBA0160 | -58 | 4.5 | ATACAAGATGTTGTGC |
| Lactobacillus casei ATCC 334 | LSEI_0131 | -133 | 5 | ACACACTATATAGTGT |
| -131 | 5.5 | ACACTATATAGTGTAT | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_0185 | -173 | 5.3 | CCACAATATCTGGTAT |
| -131 | 4.6 | AAACAAGATGTAGTGG | ||
| Lactobacillus fermentum IFO 3956 | LAF_1376 | -99 | 4.7 | CCACAAGATCTTGTAA |
| -68 | 5.3 | AAACTATATGTTGTGT | ||
| Lactobacillus helveticus DPC 4571 | lhv_0169 | -56 | 5.1 | ATACAAGATGTTGTAT |
| Lactobacillus johnsonii NCC 533 | LJ0137 | -63 | 4.6 | CTACAATATCATGTAG |
| Lactobacillus plantarum WCFS1 | lp_2932 | -80 | 5.5 | CTACTATATATAGTAT |
| -49 | 4.4 | GCACTATCAATTGTAT | ||
| Lactobacillus reuteri JCM 1112 | LAR_1249 | -92 | 5.3 | CCACAACATATAGTGT |
| Lactobacillus rhamnosus GG | LGG_00138 | -131 | 5.5 | CCACTATATAGTGTAT |
| Lactobacillus sakei subsp. sakei 23K | LSA1459 | -75 | 5.1 | ACACTATATATAGTTG |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1332 | -108 | 5.5 | ATACTATATATAGTGT |
| -76 | 5.9 | ACACTATATATTGTAT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0484 | -133 | 5.7 | ATACTATATATTGTAT |
|
Position: -30
Score: 4.7 Sequence: CCACAACATCTTGTGA
Position: 11
Score: 4.7 Sequence: AATCAATATCTTGTAT
Locus tag: LAF_1675
|
||||
| LAF_1675 | -30 | 4.7 | CCACAACATCTTGTGA | |
| 11 | 4.7 | AATCAATATCTTGTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdI | ||||
| Ortholog function: Ribonucleotide reduction protein NrdI | ||||
| Lactobacillus fermentum IFO 3956 | LAF_1675 | -30 | 4.7 | CCACAACATCTTGTGA |