Regulog LexA - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | 7 | 4 |
| Lactobacillus brevis ATCC 367 | 15 | 8 |
| Lactobacillus casei ATCC 334 | 12 | 9 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | 5 | 4 |
| Lactobacillus fermentum IFO 3956 | 8 | 5 |
| Lactobacillus helveticus DPC 4571 | 8 | 5 |
| Lactobacillus johnsonii NCC 533 | 5 | 4 |
| Lactobacillus plantarum WCFS1 | 17 | 9 |
| Lactobacillus reuteri JCM 1112 | 10 | 6 |
| Lactobacillus rhamnosus GG | 14 | 9 |
| Lactobacillus sakei subsp. sakei 23K | 8 | 6 |
| Lactobacillus salivarius subsp. salivarius UCC118 | 2 | 2 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 14 | 8 |
| Oenococcus oeni PSU-1 | 9 | 6 |
| Pediococcus pentosaceus ATCC 25745 | 8 | 6 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| dnaE |
Gene: LBA0955: DNA polymerase III alpha subunit (EC 2.7.7.7) |
*
Lactobacillus brevis ATCC 367 Site: position = -86 score = 4.7212 sequence = ACGAACATTTGTTCAT Gene: LVIS_0763: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: LSEI_1363: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: LBUL_0760: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: LAF_0867: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: lhv_1048: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: LJ1077: DNA polymerase III alpha subunit (EC 2.7.7.7) |
*
Lactobacillus plantarum WCFS1 Site: position = -191 score = 4.28035 sequence = TAGAACAACTGTTTGG Gene: lp_1899: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: LAR_0721: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: LGG_01373: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: LSA1034: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: LSL_0865: DNA polymerase III alpha subunit (EC 2.7.7.7) |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -29 score = 4.52531 sequence = GAAAACGGATGTTCGT Gene: LEUM_0774: DNA polymerase III alpha subunit (EC 2.7.7.7) |
*
Oenococcus oeni PSU-1 Site: position = -45 score = 4.98337 sequence = GCGAACATACTTTCGT Gene: OEOE_1000: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: PEPE_1094: DNA polymerase III alpha subunit (EC 2.7.7.7) |
DNA polymerase III alpha subunit (EC 2.7.7.7) |
| CRON 2. | ||||||||||||||||
| addB |
*
Lactobacillus acidophilus NCFM Site: position = -8 score = 4.05086 sequence = GCGAACAAATGATCAA Gene: LBA1166: ATP-dependent nuclease, subunit B |
*
Lactobacillus brevis ATCC 367 Site: position = -202 score = 4.44626 sequence = TTGAACGTGTGTTCGT Gene: LVIS_2268: ATP-dependent nuclease, subunit B |
Gene: LSEI_1490: ATP-dependent nuclease, subunit B |
Gene: LBUL_0907: ATP-dependent nuclease, subunit B |
*
Lactobacillus fermentum IFO 3956 Site: position = -75 score = 4.13981 sequence = GCGAACATTCATTCCC Gene: LAF_0036: ATP-dependent nuclease, subunit B |
*
Lactobacillus helveticus DPC 4571 Site: position = -8 score = 4.05086 sequence = GCGAACAAATGATCAA Gene: lhv_1274: ATP-dependent nuclease, subunit B |
Gene: LJ1204: ATP-dependent nuclease, subunit B |
*
Lactobacillus plantarum WCFS1 Site: position = -32 score = 4.33099 sequence = GAGAACGTTTGTTCAG Gene: lp_2694: ATP-dependent nuclease, subunit B |
*
Lactobacillus reuteri JCM 1112 Site: position = -67 score = 4.75461 sequence = AAGAATATATGTTCGT Gene: LAR_0047: ATP-dependent nuclease, subunit B |
Gene: LGG_01497: ATP-dependent nuclease, subunit B |
Gene: LSA0909: ATP-dependent nuclease, subunit B |
Gene: LSL_1608: ATP-dependent nuclease, subunit B |
Gene: LEUM_1482: ATP-dependent nuclease, subunit B |
Gene: OEOE_0308: ATP-dependent nuclease, subunit B |
Gene: PEPE_1833: ATP-dependent nuclease, subunit B |
ATP-dependent nuclease, subunit B |
| addA |
Gene: LBA1165: ATP-dependent nuclease, subunit A |
Gene: LVIS_2267: ATP-dependent nuclease, subunit A |
Gene: LSEI_1489: ATP-dependent nuclease, subunit A |
Gene: LBUL_0908: ATP-dependent nuclease, subunit A |
Gene: LAF_0037: ATP-dependent nuclease, subunit A |
Gene: lhv_1273: ATP-dependent nuclease, subunit A |
Gene: LJ1203: ATP-dependent nuclease, subunit A |
Gene: lp_2693: ATP-dependent nuclease, subunit A |
Gene: LAR_0048: ATP-dependent nuclease, subunit A |
Gene: LGG_01496: ATP-dependent nuclease, subunit A |
2
Lactobacillus sakei subsp. sakei 23K Gene: LSA0910: ATP-dependent nuclease, subunit A Gene: LSA0911: ATP-dependent nuclease, subunit A |
Gene: LSL_1607: ATP-dependent nuclease, subunit A |
Gene: LEUM_1481: ATP-dependent nuclease, subunit A |
Gene: OEOE_0309: ATP-dependent nuclease, subunit A |
Gene: PEPE_1832: ATP-dependent nuclease, subunit A |
ATP-dependent nuclease, subunit A |
| dinG |
Gene: LBA1164: DinG family ATP-dependent helicase |
|
Gene: LSEI_1488: DinG family ATP-dependent helicase |
Gene: LBUL_0909: DinG family ATP-dependent helicase |
|
Gene: lhv_1272: DinG family ATP-dependent helicase |
Gene: LJ1202: DinG family ATP-dependent helicase |
|
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Gene: LGG_01495: DinG family ATP-dependent helicase |
Gene: LSA0912: DinG family ATP-dependent helicase |
Gene: LSL_0686: DinG family ATP-dependent helicase |
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DinG family ATP-dependent helicase |
| LEUM_1483 |
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*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -62 score = 4.2747 sequence = ACGAACAATCGTGCGC Gene: LEUM_1483: Predicted esterase |
|
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Predicted esterase |
| CRON 3. | ||||||||||||||||
| uvrC |
Gene: LBA0946: Nuclease subunit of the excinuclease complex |
*
Lactobacillus brevis ATCC 367 Site: position = -64 score = 4.41145 sequence = CCAAACAAACATTCGG Gene: LVIS_1383: Nuclease subunit of the excinuclease complex |
*
Lactobacillus casei ATCC 334 Site: position = -29 score = 4.89813 sequence = GCGAACATTTGTTTTA Gene: LSEI_1346: Nuclease subunit of the excinuclease complex |
Gene: LBUL_0746: Nuclease subunit of the excinuclease complex |
Gene: LAF_0625: Nuclease subunit of the excinuclease complex |
Gene: lhv_1040: Nuclease subunit of the excinuclease complex |
Gene: LJ1070: Nuclease subunit of the excinuclease complex |
Gene: lp_2109: Nuclease subunit of the excinuclease complex |
Gene: LAR_0634: Nuclease subunit of the excinuclease complex |
*
Lactobacillus rhamnosus GG Site: position = -29 score = 4.89813 sequence = GCGAACATTTGTTTTA Gene: LGG_01358: Nuclease subunit of the excinuclease complex |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -35 score = 4.3607 sequence = ACGAACACTTGTTTTG Gene: LSA1055: Nuclease subunit of the excinuclease complex |
Gene: LSL_1098: Nuclease subunit of the excinuclease complex |
Gene: LEUM_0520: Nuclease subunit of the excinuclease complex |
Gene: OEOE_1073: Nuclease subunit of the excinuclease complex |
*
Pediococcus pentosaceus ATCC 25745 Site: position = 16 score = 3.8551 sequence = TTGAACATAAGTTGGC Gene: PEPE_1135: Nuclease subunit of the excinuclease complex |
Nuclease subunit of the excinuclease complex |
| CRON 4. | ||||||||||||||||
| srmB |
|
*
Lactobacillus brevis ATCC 367 Site: position = -70 score = 4.06559 sequence = TCGAACACGCGTTCAA Gene: LVIS_1870: DinG family ATP-dependent helicase |
*
Lactobacillus casei ATCC 334 Site: position = -55 score = 4.4734 sequence = GAGAATGTATGTTCTA Gene: LSEI_0288: DinG family ATP-dependent helicase |
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*
Lactobacillus plantarum WCFS1 Site: position = -52 score = 4.5697 sequence = ACGAACAGATGTTTTA Gene: lp_0308: DinG family ATP-dependent helicase |
|
*
Lactobacillus rhamnosus GG Site: position = -55 score = 4.32832 sequence = CAGAATGTATGTTCTA Gene: LGG_00328: DinG family ATP-dependent helicase |
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Gene: LSL_0349: DinG family ATP-dependent helicase |
|
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Gene: PEPE_1728: DinG family ATP-dependent helicase |
DinG family ATP-dependent helicase |
| lp_0307 |
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Gene: LVIS_1871: Conserved hypothetical protein |
Gene: LSEI_0287: Conserved hypothetical protein |
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Gene: lp_0307: Conserved hypothetical protein |
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Gene: LGG_00327: Conserved hypothetical protein |
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Conserved hypothetical protein |
| lp_0306 |
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Gene: LVIS_1872: Conserved hypothetical protein |
Gene: LSEI_0286: Conserved hypothetical protein |
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Gene: lp_0306: Conserved hypothetical protein |
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Gene: LGG_00326: Conserved hypothetical protein |
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Conserved hypothetical protein |
| CRON 5. | ||||||||||||||||
| recA |
*
Lactobacillus acidophilus NCFM Site: position = -82 score = 4.16045 sequence = TTGAACATTAGTTTGT Gene: LBA0666: DNA recombinase A |
Gene: LVIS_1237: DNA recombinase A |
*2
Lactobacillus casei ATCC 334 Gene: LSEI_0923: DNA recombinase A Site: position = -221 score = 4.82393 sequence = ACAAACGCATGTTCGA Gene: LSEI_2649: DNA recombinase A |
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -84 score = 4.0955 sequence = TTGAACGTTAGTTCGG Gene: LBUL_0535: DNA recombinase A |
*
Lactobacillus fermentum IFO 3956 Site: position = -89 score = 3.9005 sequence = CCGAACCCCTGTTCGA Gene: LAF_0511: DNA recombinase A |
*
Lactobacillus helveticus DPC 4571 Site: position = -82 score = 4.07998 sequence = TTGAACGTTAGTTTGT Gene: lhv_0713: DNA recombinase A |
Gene: LJ0839: DNA recombinase A |
*
Lactobacillus plantarum WCFS1 Site: position = -90 score = 4.81157 sequence = ACGAACTTTTGTTCGC Gene: lp_2301: DNA recombinase A |
*
Lactobacillus reuteri JCM 1112 Site: position = -89 score = 4.31521 sequence = ACGAACTTTTGTTCAC Gene: LAR_0509: DNA recombinase A |
*2
Lactobacillus rhamnosus GG Gene: LGG_00889: DNA recombinase A Site: position = -69 score = 4.43742 sequence = ACAAACGCGTGTTCGA Gene: LGG_02643: DNA recombinase A |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -94 score = 4.89442 sequence = AAGAACGTTTGTTCGA Gene: LSA0487: DNA recombinase A |
Gene: LSL_1130: DNA recombinase A |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -82 score = 5.2234 sequence = ACGAACAAATGTTCGA Gene: LEUM_0584: DNA recombinase A |
*
Oenococcus oeni PSU-1 Site: position = -57 score = 5.21756 sequence = ACGAACAAATGTTCGT Gene: OEOE_1382: DNA recombinase A |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -84 score = 4.81741 sequence = TCGAACTTTTGTTCGC Gene: PEPE_1276: DNA recombinase A |
DNA recombinase A |
| CRON 6. | ||||||||||||||||
| dinP |
Gene: LBA0414: DNA polymerase IV (EC 2.7.7.7) |
*
Lactobacillus brevis ATCC 367 Site: position = -49 score = 4.20368 sequence = GCAAACGCCCGTTCGG Gene: LVIS_1226: DNA polymerase IV (EC 2.7.7.7) |
Gene: LSEI_0779: DNA polymerase IV (EC 2.7.7.7) |
Gene: LBUL_1489: DNA polymerase IV (EC 2.7.7.7) |
|
Gene: lhv_0433: DNA polymerase IV (EC 2.7.7.7) |
Gene: LJ0471: DNA polymerase IV (EC 2.7.7.7) |
*
Lactobacillus plantarum WCFS1 Site: position = -85 score = 4.83277 sequence = TTGAACGTATGTTCGT Gene: lp_2280: DNA polymerase IV (EC 2.7.7.7) |
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Gene: LGG_00761: DNA polymerase IV (EC 2.7.7.7) |
Gene: LSA0382: DNA polymerase IV (EC 2.7.7.7) |
|
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -32 score = 3.90206 sequence = AAGAACACTTGTTCCT Gene: LEUM_1586: DNA polymerase IV (EC 2.7.7.7) |
|
Gene: PEPE_1266: DNA polymerase IV (EC 2.7.7.7) |
DNA polymerase IV (EC 2.7.7.7) |
| nrnA |
Gene: LBA0415: 3'-to-5' oligoribonuclease A |
Gene: LVIS_1225: 3'-to-5' oligoribonuclease A |
Gene: LSEI_0781: 3'-to-5' oligoribonuclease A |
Gene: LBUL_1488: 3'-to-5' oligoribonuclease A |
Gene: LAF_0519: 3'-to-5' oligoribonuclease A |
Gene: lhv_0434: 3'-to-5' oligoribonuclease A |
Gene: LJ0472: 3'-to-5' oligoribonuclease A |
Gene: lp_2279: 3'-to-5' oligoribonuclease A |
Gene: LAR_0517: 3'-to-5' oligoribonuclease A |
Gene: LGG_00763: 3'-to-5' oligoribonuclease A |
Gene: LSA0384: 3'-to-5' oligoribonuclease A |
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Gene: LEUM_1585: 3'-to-5' oligoribonuclease A |
Gene: OEOE_1286: 3'-to-5' oligoribonuclease A |
Gene: PEPE_1265: 3'-to-5' oligoribonuclease A |
3'-to-5' oligoribonuclease A |
| rheB |
Gene: LBA0416: Putative ATP-dependent DNA/RNA helicase |
Gene: LVIS_1224: Putative ATP-dependent DNA/RNA helicase |
Gene: LSEI_0782: Putative ATP-dependent DNA/RNA helicase |
Gene: LBUL_1487: Putative ATP-dependent DNA/RNA helicase |
Gene: LAF_0520: Putative ATP-dependent DNA/RNA helicase |
Gene: lhv_0435: Putative ATP-dependent DNA/RNA helicase |
Gene: LJ0473: Putative ATP-dependent DNA/RNA helicase |
Gene: lp_2278: Putative ATP-dependent DNA/RNA helicase |
Gene: LAR_0518: Putative ATP-dependent DNA/RNA helicase |
Gene: LGG_00764: Putative ATP-dependent DNA/RNA helicase |
Gene: LSA0385: Putative ATP-dependent DNA/RNA helicase |
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Gene: LEUM_1584: Putative ATP-dependent DNA/RNA helicase |
Gene: OEOE_1285: Putative ATP-dependent DNA/RNA helicase |
Gene: PEPE_1264: Putative ATP-dependent DNA/RNA helicase |
Putative ATP-dependent DNA/RNA helicase |
| CRON 7. | ||||||||||||||||
| lexA |
*
Lactobacillus acidophilus NCFM Site: position = -80 score = 4.10272 sequence = AAGAACGCCTGTTTGA Gene: LBA1280: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) |
|
*2
Lactobacillus casei ATCC 334 Site: position = -61 score = 5.02178 sequence = GCAAACGTTCGTTCGC Gene: LSEI_0730: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) Site: position = -53 score = 4.14189 sequence = TCAAAAGTTTTTTTGT Gene: LSEI_1968: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) |
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -85 score = 4.06417 sequence = TAGAACGCCCGTTTGC Gene: LBUL_1265: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) |
*
Lactobacillus fermentum IFO 3956 Site: position = -79 score = 4.88731 sequence = TCGAACGTACGTTTTA Gene: LAF_0708: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) |
*
Lactobacillus helveticus DPC 4571 Site: position = -82 score = 4.78158 sequence = TAGAACATTCGTTTGA Gene: lhv_1364: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) |
*
Lactobacillus johnsonii NCC 533 Site: position = -71 score = 4.1388 sequence = AAGAACGCCTGTTTGC Gene: LJ1508: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) |
*
Lactobacillus plantarum WCFS1 Site: position = -81 score = 5.00156 sequence = CCGAACATTTGTTTGA Gene: lp_2063: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) |
*
Lactobacillus reuteri JCM 1112 Site: position = -71 score = 5.17189 sequence = GCGAACGTACGTTTGA Gene: LAR_0650: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) |
*
Lactobacillus rhamnosus GG Site: position = -60 score = 4.69334 sequence = GCAAACGTCCGTTCGT Gene: LGG_00717: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -70 score = 4.7182 sequence = ACGAACACTTGTTTGA Gene: LSA1275: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -74 score = 4.57633 sequence = ACGAACGTTAGTTTGA Gene: LSL_0540: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -75 score = 5.02424 sequence = ACGAACAAACGTTTGA Gene: LEUM_1204: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) |
*
Oenococcus oeni PSU-1 Site: position = -76 score = 4.89856 sequence = ACGAACATGTGTTTGT Gene: OEOE_0970: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -68 score = 5.14664 sequence = GCGAACATTTGTTTGA Gene: PEPE_0870: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) |
SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) |
| CRON 8. | ||||||||||||||||
| xerC |
Gene: LBA1145: Site-specific DNA-tyrosine recombinase, XerC |
*
Lactobacillus brevis ATCC 367 Site: position = -112 score = 4.09422 sequence = TAAAACAAATATTTTA Site: position = -27 score = 4.74978 sequence = CAGAACATACGTTTGG Gene: LVIS_0812: Site-specific DNA-tyrosine recombinase, XerC |
*
Lactobacillus casei ATCC 334 Site: position = -26 score = 5.00386 sequence = GAAAACATACGTTCGA Gene: LSEI_1415: Site-specific DNA-tyrosine recombinase, XerC |
Gene: LBUL_0947: Site-specific DNA-tyrosine recombinase, XerC |
Gene: LAF_0940: Site-specific DNA-tyrosine recombinase, XerC |
*
Lactobacillus helveticus DPC 4571 Site: position = -77 score = 4.86205 sequence = TAAAACATTTGTTCGA Gene: lhv_1253: Site-specific DNA-tyrosine recombinase, XerC |
*
Lactobacillus johnsonii NCC 533 Site: position = -28 score = 4.66372 sequence = ACAAACCTACGTTCGA Gene: LJ1177: Site-specific DNA-tyrosine recombinase, XerC |
|
Gene: LAR_0930: Site-specific DNA-tyrosine recombinase, XerC |
*
Lactobacillus rhamnosus GG Site: position = -27 score = 5.08433 sequence = GAAAACATATGTTCGA Gene: LGG_01425: Site-specific DNA-tyrosine recombinase, XerC |
Gene: LSA0967: Site-specific DNA-tyrosine recombinase, XerC |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -25 score = 4.52045 sequence = TCAAATGAATGTTCGG Gene: LSL_1797: Site-specific DNA-tyrosine recombinase, XerC |
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Site-specific DNA-tyrosine recombinase, XerC |
| CRON 9. | ||||||||||||||||
| parE |
Gene: LBA1122: Topoisomerase IV subunit B (EC 5.99.1.-) |
*
Lactobacillus brevis ATCC 367 Site: position = -70 score = 4.72962 sequence = TTGAACATACGTTCGG Gene: LVIS_0804: Topoisomerase IV subunit B (EC 5.99.1.-) |
Gene: LSEI_1408: Topoisomerase IV subunit B (EC 5.99.1.-) |
Gene: LBUL_0900: Topoisomerase IV subunit B (EC 5.99.1.-) |
Gene: LAF_0903: Topoisomerase IV subunit B (EC 5.99.1.-) |
Gene: lhv_1232: Topoisomerase IV subunit B (EC 5.99.1.-) |
Gene: LJ1170: Topoisomerase IV subunit B (EC 5.99.1.-) |
*
Lactobacillus plantarum WCFS1 Site: position = -185 score = 4.90193 sequence = GCGAACGTGTGTTTGC Gene: lp_1840: Topoisomerase IV subunit B (EC 5.99.1.-) |
*
Lactobacillus reuteri JCM 1112 Site: position = -45 score = 4.61093 sequence = TCGAACATACGTTTAG Gene: LAR_0752: Topoisomerase IV subunit B (EC 5.99.1.-) |
*
Lactobacillus rhamnosus GG Site: position = -179 score = 4.54197 sequence = ACGAACACACATTCGA Gene: LGG_01419: Topoisomerase IV subunit B (EC 5.99.1.-) |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -113 score = 4.74273 sequence = GCGAACATACATTTGG Gene: LSA0976: Topoisomerase IV subunit B (EC 5.99.1.-) |
Gene: LSL_0871: Topoisomerase IV subunit B (EC 5.99.1.-) |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -36 score = 4.28432 sequence = ACGAACACTGGTTCGT Gene: LEUM_1364: Topoisomerase IV subunit B (EC 5.99.1.-) |
*
Oenococcus oeni PSU-1 Site: position = -8 score = 4.77837 sequence = ACGAATGAATGTTCGC Gene: OEOE_1026: Topoisomerase IV subunit B (EC 5.99.1.-) |
Gene: PEPE_0959: Topoisomerase IV subunit B (EC 5.99.1.-) |
Topoisomerase IV subunit B (EC 5.99.1.-) |
| parC |
Gene: LBA1123: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: LVIS_0805: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: LSEI_1409: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: LBUL_0901: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: LAF_0904: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: lhv_1233: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: LJ1171: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: lp_1839: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: LAR_0753: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: LGG_01420: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: LSA0975: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: LSL_0872: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: LEUM_1363: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: OEOE_1027: Topoisomerase IV subunit A (EC 5.99.1.-) |
Gene: PEPE_0958: Topoisomerase IV subunit A (EC 5.99.1.-) |
Topoisomerase IV subunit A (EC 5.99.1.-) |
| CRON 10. | ||||||||||||||||
| uvrB |
*
Lactobacillus acidophilus NCFM Site: position = -87 score = 4.59686 sequence = GCGAAAACACGTTCGT Gene: LBA0688: Excinuclease ABC, subunit B |
*
Lactobacillus brevis ATCC 367 Site: position = -101 score = 4.88021 sequence = GCGAAAGTATGTTCGG Gene: LVIS_0648: Excinuclease ABC, subunit B |
*
Lactobacillus casei ATCC 334 Site: position = -127 score = 4.16597 sequence = ACGAAATTTTGTTTGG Site: position = -206 score = 5.02529 sequence = GCGAAAGTATGTTCGC Gene: LSEI_0956: Excinuclease ABC, subunit B |
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -64 score = 4.11058 sequence = TAGAATCTATGTTCGG Gene: LBUL_0549: Excinuclease ABC, subunit B |
*
Lactobacillus fermentum IFO 3956 Site: position = -99 score = 4.73644 sequence = ACGAATAAACGTTCGT Gene: LAF_0353: Excinuclease ABC, subunit B |
*
Lactobacillus helveticus DPC 4571 Site: position = -86 score = 4.59686 sequence = GCGAAAACACGTTCGT Gene: lhv_0729: Excinuclease ABC, subunit B |
*
Lactobacillus johnsonii NCC 533 Site: position = -86 score = 5.02529 sequence = GCGAAAATACGTTCGC Gene: LJ0863: Excinuclease ABC, subunit B |
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Lactobacillus plantarum WCFS1 Site: position = -146 score = 4.98921 sequence = GCGAAAGTATGTTCGA Gene: lp_0772: Excinuclease ABC, subunit B |
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Lactobacillus reuteri JCM 1112 Site: position = -132 score = 4.39476 sequence = ACGAATACATGTTTGG Gene: LAR_0372: Excinuclease ABC, subunit B |
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Lactobacillus rhamnosus GG Site: position = -271 score = 5.02529 sequence = GCGAAAGTATGTTCGC Gene: LGG_00923: Excinuclease ABC, subunit B |
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Lactobacillus sakei subsp. sakei 23K Site: position = -190 score = 4.88021 sequence = GCGAAAATACGTTCGG Gene: LSA0523: Excinuclease ABC, subunit B |
Gene: LSL_1175: Excinuclease ABC, subunit B |
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Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -89 score = 4.89442 sequence = TAGAACGTTTGTTCGT Gene: LEUM_0392: Excinuclease ABC, subunit B |
Gene: OEOE_0372: Excinuclease ABC, subunit B |
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Pediococcus pentosaceus ATCC 25745 Site: position = -127 score = 4.88021 sequence = GCGAAAGTATGTTCGG Gene: PEPE_0448: Excinuclease ABC, subunit B |
Excinuclease ABC, subunit B |
| OEOE_0373 |
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Gene: OEOE_0373: Short-chain alcohol dehydrogenase |
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Short-chain alcohol dehydrogenase |
| uvrA |
Gene: LBA0689: Excinuclease ABC, subunit A |
Gene: LVIS_0649: Excinuclease ABC, subunit A |
Gene: LSEI_0957: Excinuclease ABC, subunit A |
Gene: LBUL_0550: Excinuclease ABC, subunit A |
Gene: LAF_0354: Excinuclease ABC, subunit A |
Gene: lhv_0730: Excinuclease ABC, subunit A |
Gene: LJ0864: Excinuclease ABC, subunit A |
Gene: lp_0773: Excinuclease ABC, subunit A |
Gene: LAR_0373: Excinuclease ABC, subunit A |
Gene: LGG_00924: Excinuclease ABC, subunit A |
Gene: LSA0524: Excinuclease ABC, subunit A |
Gene: LSL_1174: Excinuclease ABC, subunit A |
Gene: LEUM_0393: Excinuclease ABC, subunit A |
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Oenococcus oeni PSU-1 Site: position = -50 score = 4.17301 sequence = GGGAACTAATGTTCGC Gene: OEOE_0374: Excinuclease ABC, subunit A |
Gene: PEPE_0449: Excinuclease ABC, subunit A |
Excinuclease ABC, subunit A |
| CRON 11. | ||||||||||||||||
| umuC |
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Lactobacillus casei ATCC 334 Site: position = -40 score = 5.24652 sequence = GCAAACGTATGTTCGT Gene: LSEI_1049: UV-damage repair protein |
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Lactobacillus fermentum IFO 3956 Site: position = -67 score = 3.94425 sequence = CCGAACACTTGTTCCG Gene: LAF_1605: UV-damage repair protein |
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Lactobacillus plantarum WCFS1 Site: position = -192 score = 4.90674 sequence = AAGAACATATGTTCTT Gene: lp_3023: UV-damage repair protein |
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Lactobacillus reuteri JCM 1112 Site: position = -59 score = 4.8004 sequence = TTGAACATATGTTTGA Gene: LAR_1238: UV-damage repair protein |
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Lactobacillus rhamnosus GG Site: position = -40 score = 5.24652 sequence = GCAAACATACGTTCGT Gene: LGG_01010: UV-damage repair protein |
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Pediococcus pentosaceus ATCC 25745 Site: position = -41 score = 5.15525 sequence = AAGAACATATGTTCGT Gene: PEPE_1243: UV-damage repair protein |
UV-damage repair protein |
| LVIS_2094 |
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Gene: LSEI_1048: Conserved hypothetical protein |
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Gene: LGG_01009: Conserved hypothetical protein |
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Gene: PEPE_1242: Conserved hypothetical protein |
Conserved hypothetical protein |
| lp_3022 |
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Gene: LAF_1606: Conserved hypothetical protein |
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Gene: lp_3022: Conserved hypothetical protein |
Gene: LAR_1237: Conserved hypothetical protein |
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Conserved hypothetical protein |
| CRON 12. | ||||||||||||||||
| LJ1544 |
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Lactobacillus casei ATCC 334 Site: position = -53 score = 4.34053 sequence = TTGAACACTTGTTCGT Site: position = -26 score = 4.99572 sequence = ACAAACAAATGTTCGG Gene: LSEI_1631: hypothetical protein |
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Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -71 score = 4.35578 sequence = TCGAATACTCGTTCGT Site: position = -44 score = 4.35122 sequence = ACAAACAGGCGTTCGA Gene: LBUL_1313: hypothetical protein |
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Lactobacillus johnsonii NCC 533 Site: position = -64 score = 4.85037 sequence = AAAAACATTTGTTCGT Site: position = -36 score = 4.38941 sequence = GCAAACACAAGTTCGG Gene: LJ1544: hypothetical protein |
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Lactobacillus rhamnosus GG Site: position = -53 score = 4.52673 sequence = TTGAACACATGTTCGT Site: position = -26 score = 4.91525 sequence = ACAAACAAACGTTCGG Gene: LGG_01676: hypothetical protein |
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Lactobacillus sakei subsp. sakei 23K Site: position = -56 score = 4.89442 sequence = TAGAACGTTTGTTCGT Site: position = -29 score = 4.99572 sequence = ACAAACAAATGTTCGG Gene: LSA0683: hypothetical protein |
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Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -54 score = 4.72705 sequence = TTGAACATTTGTTCGT Gene: LEUM_1714: hypothetical protein |
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Oenococcus oeni PSU-1 Site: position = -44 score = 4.75641 sequence = TCGAACAAGCGTTCGT Gene: OEOE_1232: hypothetical protein |
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Pediococcus pentosaceus ATCC 25745 Site: position = -54 score = 4.68826 sequence = AAGAACGCATGTTCGT Site: position = -27 score = 5.09887 sequence = ACAAACAAATGTTCGT Gene: PEPE_0824: hypothetical protein |
hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |