Propagation of GlnR regulog to Lactobacillus rhamnosus GG
| Source regulog: | GlnR - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus rhamnosus GG |
| Orthologous TF(s) | LGG_01697 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -174
Score: 5.4 Sequence: ATGTTATATAAGCTGACGT
Locus tag: LGG_00633
|
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| LGG_00633 | -174 | 5.4 | ATGTTATATAAGCTGACGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrgA | ||||
| Ortholog function: Ammonium transporter | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0844 | -177 | 5.3 | ATGTCATAAAAATTAACAT |
| -42 | 6 | GTGTTAGAATTCCTAACAT | ||
| Lactobacillus casei ATCC 334 | LSEI_0653 | -173 | 4.7 | ATGTCACATAAGCTAACGC |
| Lactobacillus plantarum WCFS1 | lp_0349 | -46 | 6.2 | ATGTTATAATTTCTAACAT |
| Lactobacillus rhamnosus GG | LGG_00633 | -174 | 5.4 | ATGTTATATAAGCTGACGT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0235 | -94 | 5.4 | ATGTCATAAAAAGTTACAT |
| -41 | 5.4 | ATGTTATAATTTTTGACAT | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0776 | -89 | 5.3 | ATGTAAGAAAAGCTACCAC |
| Oenococcus oeni PSU-1 | OEOE_1679 | -62 | 4.8 | TTGTTATATTAGTTAACAC |
|
Position: -79
Score: 6 Sequence: ATGTAAGAAAACCTTACAT
Locus tag: LGG_01697
|
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| LGG_01697 | -79 | 6 | ATGTAAGAAAACCTTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnR | ||||
| Ortholog function: Nitrogen metabolism transcriptional regulator, MerR family | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0991 | -82 | 6.3 | ATGTCAGAAAACCTAACAT |
| Lactobacillus casei ATCC 334 | LSEI_1653 | -79 | 6 | ATGTCAGAAAAGCTTACAT |
| Lactobacillus plantarum WCFS1 | lp_1580 | -82 | 5.4 | GTGTGATATTTTCTAACAT |
| Lactobacillus rhamnosus GG | LGG_01697 | -79 | 6 | ATGTAAGAAAACCTTACAT |
| Lactobacillus sakei subsp. sakei 23K | LSA1322 | -77 | 6.3 | ATGTCAGAAAACCTAACAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0557 | -83 | 5.4 | GTGTAAGAAAATATTACAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0716 | -80 | 5.9 | ATGTTAGAAAACCTGACAC |
| Oenococcus oeni PSU-1 | OEOE_0951 | -67 | 5.7 | ATGTTAGCTTTCCTAACAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0738 | -81 | 6.2 | ATGTTAGAAAATGTAACAT |
|
Position: -256
Score: 6.1 Sequence: ATGTAAGAAAAGCTAACAT
Locus tag: LGG_02862
|
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| LGG_02862 | -256 | 6.1 | ATGTAAGAAAAGCTAACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnP | ||||
| Ortholog function: Glutamine ABC transporter, permease and substrate-binding protein | ||||
| Lactobacillus casei ATCC 334 | LSEI_2849 | -172 | 5.3 | ATGTCAATTAATCTAACAT |
| Lactobacillus rhamnosus GG | LGG_02862 | -256 | 6.1 | ATGTAAGAAAAGCTAACAT |
|
Position: -90
Score: 5 Sequence: TTGTTAGACTAGCTCACAT
Locus tag: LGG_02872
|
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| LGG_02872 | -90 | 5 | TTGTTAGACTAGCTCACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ansB | ||||
| Ortholog function: Aspartate ammonia-lyase (EC 4.3.1.1) | ||||
| Lactobacillus casei ATCC 334 | LSEI_2863 | -90 | 4.9 | TTGTCAGACTACCTAACAA |
| Lactobacillus plantarum WCFS1 | lp_2830 | -44 | 5.6 | ATGTTAGAAGATATAACAT |
| Lactobacillus rhamnosus GG | LGG_02872 | -90 | 5 | TTGTTAGACTAGCTCACAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0153 | -81 | 4.9 | GTGTCATAAAACTTAACAA |