Regulog TagR - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | RpiR |
| Regulation mode: | repressor |
| Biological process: | Tagatose utilization |
| Effector: | Tagatose-6-phosphate |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By TF family - RpiR
- By effector - Tagatose-6-phosphate
- By pathway - Tagatose utilization
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus brevis ATCC 367 | ||
| Lactobacillus casei ATCC 334 | 3 | 2 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus johnsonii NCC 533 | 3 | 2 |
| Lactobacillus plantarum WCFS1 | ||
| Lactobacillus reuteri JCM 1112 | ||
| Lactobacillus rhamnosus GG | 3 | 2 |
| Lactobacillus sakei subsp. sakei 23K | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | ||
| Oenococcus oeni PSU-1 | ||
| Pediococcus pentosaceus ATCC 25745 | 4 | 2 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| tagK |
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Lactobacillus casei ATCC 334 Site: position = -112 score = 4.77095 sequence = TGAAAAGCATTTTC Gene: LSEI_2655: Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase |
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Lactobacillus johnsonii NCC 533 Site: position = -107 score = 4.70059 sequence = TGTAAAACTTTACC Gene: LJ0145: Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase |
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Lactobacillus rhamnosus GG Site: position = -112 score = 4.77095 sequence = TGAAAAGCATTTTC Gene: LGG_02648: Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase |
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Pediococcus pentosaceus ATCC 25745 Site: position = -60 score = 4.60519 sequence = TGAAAACATTTACA Gene: PEPE_0141: Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase |
Tagatose-6-phosphate kinase (EC 2.7.1.144) / 1-phosphofructokinase |
| tagAB |
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Gene: LSEI_2654: Tagatose-specific PTS EIIA component (EC 2.7.1.69) / Tagatose-specific PTS EIIBC component (EC 2.7.1.69) |
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Gene: LJ0146: Tagatose-specific PTS EIIA component (EC 2.7.1.69) / Tagatose-specific PTS EIIBC component (EC 2.7.1.69) |
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Gene: LGG_02647: Tagatose-specific PTS EIIA component (EC 2.7.1.69) / Tagatose-specific PTS EIIBC component (EC 2.7.1.69) |
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Gene: PEPE_0142: Tagatose-specific PTS EIIA component (EC 2.7.1.69) / Tagatose-specific PTS EIIBC component (EC 2.7.1.69) |
Tagatose-specific PTS EIIA component (EC 2.7.1.69) / Tagatose-specific PTS EIIBC component (EC 2.7.1.69) |
| tagD |
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Gene: PEPE_0143: Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40) |
Tagatose 1,6-diphosphate aldolase (EC 4.1.2.40) |
| CRON 2. | ||||||||||||||||
| tagR |
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Lactobacillus casei ATCC 334 Site: position = -27 score = 4.77095 sequence = GAAAATGCTTTTCA Gene: LSEI_2656: Tagatose utilization transcriptional regulator TagR, RpiR family |
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Lactobacillus johnsonii NCC 533 Site: position = -28 score = 4.70059 sequence = GGTAAAGTTTTACA Gene: LJ0144: Tagatose utilization transcriptional regulator TagR, RpiR family |
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Lactobacillus rhamnosus GG Site: position = -50 score = 4.77095 sequence = GAAAATGCTTTTCA Gene: LGG_02649: Tagatose utilization transcriptional regulator TagR, RpiR family |
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Pediococcus pentosaceus ATCC 25745 Site: position = -70 score = 4.60519 sequence = TGTAAATGTTTTCA Gene: PEPE_0140: Tagatose utilization transcriptional regulator TagR, RpiR family |
Tagatose utilization transcriptional regulator TagR, RpiR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |