Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of ArgR regulog to Lactobacillus plantarum JDM1

Reference regulog properties
Source regulog: ArgR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor, activator
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus plantarum JDM1
Orthologous TF(s) JDM1_1345, JDM1_1180
Regulated genes 6
Built upon 27 sites [see more]
Predicted regulatory interactions in Lactobacillus plantarum JDM1
Locus tag Position Score Sequence
Position: -168
Score: 4.8
Sequence: ATTGAAAAAATATTCACT
Locus tag: JDM1_0427
JDM1_0427 -168 4.8 ATTGAAAAAATATTCACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: carA
Ortholog function: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5)
Lactobacillus fermentum IFO 3956 LAF_0727 -120 3.3 CGTTCATAAATAACCAAT
Lactobacillus plantarum WCFS1 lp_0527 -169 4.9 ATTGAAAAAATATTCATT
Position: -245
Score: 4
Sequence: TTTGGTTAAAATTTCATT
Position: -220
Score: 3.6
Sequence: ATGGGATAAGTAAACATC
Position: -182
Score: 4
Sequence: TAAAAATACATATTAAGT
Position: -155
Score: 3.8
Sequence: ACTGAATAAAGCTAAAAA
Position: -147
Score: 4.1
Sequence: AAGCTAAAAATATGCAAT
Position: -127
Score: 4.1
Sequence: ATAGAATAAAAGTGAATA
Position: -117
Score: 4.5
Sequence: AGTGAATATTTTTTCAAT
Locus tag: JDM1_0428
JDM1_0428 -245 4 TTTGGTTAAAATTTCATT
-220 3.6 ATGGGATAAGTAAACATC
-182 4 TAAAAATACATATTAAGT
-155 3.8 ACTGAATAAAGCTAAAAA
-147 4.1 AAGCTAAAAATATGCAAT
-127 4.1 ATAGAATAAAAGTGAATA
-117 4.5 AGTGAATATTTTTTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Lactobacillus fermentum IFO 3956 LAF_0726 -220 4.9 TGTGTATAAATATTTAGT
Lactobacillus plantarum WCFS1 lp_0528 -117 4.5 AATGAATATTTTTTCAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0060 -71 3.4 TTTGCATATTTATTGTAT
Position: -333
Score: 3.3
Sequence: AAAATATAAAAAGTAATG
Position: -178
Score: 3.3
Sequence: TTTCAAAAATAACAAAAA
Position: -171
Score: 3.3
Sequence: AATAACAAAAAATATACT
Position: -169
Score: 4
Sequence: TAACAAAAAATATACTGA
Position: -139
Score: 3.7
Sequence: TCTGCATAAAAATTCTAC
Position: -136
Score: 3
Sequence: GCATAAAAATTCTACATT
Position: -102
Score: 3.7
Sequence: AAATGATGAATATATTTA
Position: -98
Score: 4
Sequence: GATGAATATATTTAAAAT
Position: -96
Score: 3.3
Sequence: TGAATATATTTAAAATAT
Position: -93
Score: 3.1
Sequence: ATATATTTAAAATATTAT
Position: -88
Score: 3.2
Sequence: TTTAAAATATTATTGAAT
Position: -87
Score: 3.1
Sequence: TTAAAATATTATTGAATA
Position: -85
Score: 3
Sequence: AAAATATTATTGAATAAA
Position: -77
Score: 4.4
Sequence: ATTGAATAAAGTTAAATT
Position: -36
Score: 3.1
Sequence: TAAAAGCAAAGATAAAAA
Position: -34
Score: 3.3
Sequence: AAAGCAAAGATAAAAATT
Position: -5
Score: 3
Sequence: AATCAATGGTCAAACAAA
Position: 11
Score: 3.7
Sequence: AAATGATAAAATTATTCT
Locus tag: JDM1_0642
JDM1_0642 -333 3.3 AAAATATAAAAAGTAATG
-178 3.3 TTTCAAAAATAACAAAAA
-171 3.3 AATAACAAAAAATATACT
-169 4 TAACAAAAAATATACTGA
-139 3.7 TCTGCATAAAAATTCTAC
-136 3 GCATAAAAATTCTACATT
-102 3.7 AAATGATGAATATATTTA
-98 4 GATGAATATATTTAAAAT
-96 3.3 TGAATATATTTAAAATAT
-93 3.1 ATATATTTAAAATATTAT
-88 3.2 TTTAAAATATTATTGAAT
-87 3.1 TTAAAATATTATTGAATA
-85 3 AAAATATTATTGAATAAA
-77 4.4 ATTGAATAAAGTTAAATT
-36 3.1 TAAAAGCAAAGATAAAAA
-34 3.3 AAAGCAAAGATAAAAATT
-5 3 AATCAATGGTCAAACAAA
11 3.7 AAATGATAAAATTATTCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argG
Ortholog function: Argininosuccinate synthase (EC 6.3.4.5)
Lactobacillus casei ATCC 334 LSEI_2811 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus fermentum IFO 3956 LAF_1625 -136 2.3 CTTGCATTTTTATTTGAT
Lactobacillus plantarum WCFS1 lp_0775 -139 4.1 TCTGCATAAAAATTCTAT
Lactobacillus reuteri JCM 1112 LAR_0702 -164 4.7 ATTAAATAATTATTCTAT
Lactobacillus rhamnosus GG LGG_02817 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0306 -47 3.5 AATGAATAGATTATGAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1459 -73 3.8 ATTGCATATTTAATCAAA
Position: -39
Score: 4
Sequence: AATAAAGAAATTTTCAAA
Position: -17
Score: 3.8
Sequence: CTTGCATAAATAATCATA
Locus tag: JDM1_1769
JDM1_1769 -39 4 AATAAAGAAATTTTCAAA
-17 3.8 CTTGCATAAATAATCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: artPQ
Ortholog function: Arginine ABC transporter, substrate-binding and permease protein
Lactobacillus brevis ATCC 367 LVIS_1200 -161 4.6 AATGTATAAATTTTTATA
-96 4.9 AGTGTATAAAAATAGATA
Lactobacillus casei ATCC 334 LSEI_2810 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus casei ATCC 334 LSEI_1344 -56 4.2 ATTGCATAAAAATCAATT
Lactobacillus plantarum WCFS1 lp_2111 -17 3.8 CTTGCATAAATAATCATA
Lactobacillus reuteri JCM 1112 LAR_0698 -253 4.7 ATTGCATAAATAAACATT
Lactobacillus rhamnosus GG LGG_02816 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus rhamnosus GG LGG_01356 -56 4.3 ATTGCATAAAAATTGAAT
Lactobacillus sakei subsp. sakei 23K LSA1057 -55 4.5 ATTGCATAAATATTTATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1541 -162 3.5 GTTACATAAATATATTTT
-82 4.3 CTTGCATAAATAAACAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0655 -62 5.3 ATTGTATAAAAATTCAAA
Pediococcus pentosaceus ATCC 25745 PEPE_1137 -94 5.2 AATGTATAAAAATTCATA
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