Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NagR regulog to Pediococcus pentosaceus ATCC 25745

Reference regulog properties
Source regulog: NagR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine-6-phosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Pediococcus pentosaceus ATCC 25745
Orthologous TF(s) PEPE_1527
Regulated genes 4
Built upon 49 sites [see more]
Predicted regulatory interactions in Pediococcus pentosaceus ATCC 25745
Locus tag Position Score Sequence
Position: -60
Score: 5.1
Sequence: ATTTTGGTTTAGACCATTTT
Position: -39
Score: 5.5
Sequence: TAATTGGACTATACCAAAAA
Locus tag: PEPE_0335
PEPE_0335 -60 5.1 ATTTTGGTTTAGACCATTTT
-39 5.5 TAATTGGACTATACCAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagB
Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Lactobacillus acidophilus NCFM LBA1948 -57 5.7 AAAATGGTCTATTCCATTTT
-37 5 ATAATGGACTAGACCATTAA
Lactobacillus casei ATCC 334 LSEI_2889 -77 4.5 ATTACGGTATAGACCACTAT
-34 4.7 ACATTGGACTAGACCAGATA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_2010 -53 5.6 AAAATGGACTATACCAATAT
Lactobacillus helveticus DPC 4571 lhv_2077 -54 5.7 AAAATGGTCTATTCCATTTT
-34 4.6 ATAATGGACTAGACCAGTAA
Lactobacillus rhamnosus GG LGG_02913 -78 5.2 AATTAGGTATAGACCATTGT
-35 4.9 ATATTGGACTAGACCAGATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1465 -92 5.1 TAAATGGTATAGACCATGAA
-39 5.4 TAATTGGTATAGACCAAAAC
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0354 -50 5.1 ATATTGGTATAGACCAAAAC
-35 5.8 AAAACGGTATAGACCAATTT
Pediococcus pentosaceus ATCC 25745 PEPE_0335 -60 5.1 ATTTTGGTTTAGACCATTTT
-39 5.5 TAATTGGACTATACCAAAAA
Position: -178
Score: 4.2
Sequence: AAAATGGCATAGTTTTTTTA
Position: -124
Score: 5
Sequence: CATTTGATATATACCGATTT
Position: -35
Score: 4.6
Sequence: AAATTTAAATATATTAATTT
Locus tag: PEPE_0478
PEPE_0478 -178 4.2 AAAATGGCATAGTTTTTTTA
-124 5 CATTTGATATATACCGATTT
-35 4.6 AAATTTAAATATATTAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glmS
Ortholog function: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
Lactobacillus acidophilus NCFM LBA0462 -28 4.2 ATATTGAACTAGACCAAAGG
Lactobacillus brevis ATCC 367 LVIS_0687 -106 5.1 ATTTCAGTCTATACCAATTT
Lactobacillus casei ATCC 334 LSEI_1019 -159 5.3 AAATTAATATAGACCAATAT
-48 5 AAATCTGTCTAAACCAATTT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0440 -29 4.5 AAATTGAACTAGACCAAAGG
Lactobacillus fermentum IFO 3956 LAF_0382 -47 5.1 GAATTTATCTATACCAATTT
Lactobacillus helveticus DPC 4571 lhv_0491 -131 5.1 AAAATTGATTATACCAATTT
Lactobacillus johnsonii NCC 533 LJ1581 -130 5 CTTTTGATATAGACCAATTA
Lactobacillus reuteri JCM 1112 LAR_0405 -134 4.6 TAAATCATATAGACCAATCT
Lactobacillus rhamnosus GG LGG_00983 -47 4.5 AAACCTGTCTAAACCAATTT
Lactobacillus sakei subsp. sakei 23K LSA1355 -114 5.4 TAATTGAAATATACCAATAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1627 -58 5 ATCAAGGTCTATACCAATTT
Oenococcus oeni PSU-1 OEOE_0635 -113 4.8 TTAATGGCCTATACCAATGT
Pediococcus pentosaceus ATCC 25745 PEPE_0478 -124 5 CATTTGATATATACCGATTT
Position: -57
Score: 5.1
Sequence: TTTTTGGTCTATACCGATAT
Locus tag: PEPE_1528
PEPE_1528 -57 5.1 TTTTTGGTCTATACCGATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagA
Ortholog function: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Lactobacillus brevis ATCC 367 LVIS_0539 -66 4.8 TTTCTGGTCTATACCGATTA
Lactobacillus casei ATCC 334 LSEI_1808 -73 4.8 ATCTTGGTCTATACCAGTTA
Lactobacillus plantarum WCFS1 lp_0562 -55 5.2 AGTTTGGTCTATACCGATTA
Lactobacillus sakei subsp. sakei 23K LSA1588 -56 5.6 TTTTTGGTCTATACCATTTA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1466 -146 5.4 GTTTTGGTCTATACCAATTA
-93 5.1 TTCATGGTCTATACCATTTA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0425 -82 5.9 TAATAGGTCTAGACCAATTA
Pediococcus pentosaceus ATCC 25745 PEPE_1528 -57 5.1 TTTTTGGTCTATACCGATAT
Position: -144
Score: 6.1
Sequence: TAATAGGTATATACCAATTT
Locus tag: PEPE_1816
PEPE_1816 -144 6.1 TAATAGGTATATACCAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagP
Ortholog function: N-acetylglucosamine-specific PTS system, EIIABC component (EC 2.7.1.69)
Lactobacillus plantarum WCFS1 lp_2969 -97 4.8 CCAATGGACTATACCAATAA
Lactobacillus sakei subsp. sakei 23K LSA0060 -150 5.1 TATACGGTATAGACCAAAAT
-95 4.9 TTAAAGGTCTATACCAACTA
Pediococcus pentosaceus ATCC 25745 PEPE_1816 -144 6.1 TAATAGGTATATACCAATTT
-100 4.5 AAAGCGGATTATACCAATAA
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