Statistics of regulated genes

Genome	Genes	Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956	2	1
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1	4	2
Lactobacillus reuteri JCM 1112	2	1
Lactobacillus rhamnosus GG
Lactobacillus sakei subsp. sakei 23K
Lactobacillus salivarius subsp. salivarius UCC118	1	1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	4	2
Oenococcus oeni PSU-1	2	1
Pediococcus pentosaceus ATCC 25745	2	1

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes																Function
CRON 1.
bioY	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367 Gene: LVIS_0923: Substrate-specific component BioY of biotin ECF transporter	Lactobacillus casei ATCC 334 Gene: LSEI_2218: Substrate-specific component BioY of biotin ECF transporter	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	* Lactobacillus fermentum IFO 3956 Site: position = -54 score = 8.47466 sequence = ATTGTAACC-(16)-GGTTACAAA Gene: LAF_0321: Substrate-specific component BioY of biotin ECF transporter	Lactobacillus helveticus DPC 4571 Gene: lhv_1920: Substrate-specific component BioY of biotin ECF transporter	Lactobacillus johnsonii NCC 533	* Lactobacillus plantarum WCFS1 Site: position = -76 score = 7.72647 sequence = ACAGTAACC-(16)-GGTTACTGT Gene: lp_0336: Substrate-specific component BioY of biotin ECF transporter	* Lactobacillus reuteri JCM 1112 Site: position = -71 score = 8.69776 sequence = ATAGTAACC-(16)-GGTTACAAT Gene: LAR_0704: Substrate-specific component BioY of biotin ECF transporter	Lactobacillus rhamnosus GG Gene: LGG_02223: Substrate-specific component BioY of biotin ECF transporter	Lactobacillus sakei subsp. sakei 23K Gene: LSA0825: Substrate-specific component BioY of biotin ECF transporter	* Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -91 score = 8.19175 sequence = ATTGTTAAC-(16)-GTTAACAAT Gene: LSL_0074: Substrate-specific component BioY of biotin ECF transporter	*2 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -124 score = 7.58107 sequence = TTTGTTAAC-(16)-GGTAACATA Gene: LEUM_0302: Substrate-specific component BioY of biotin ECF transporter Site: position = -45 score = 8.41961 sequence = TTAGTAAAC-(16)-GTTTACTAA Gene: LEUM_0516: Substrate-specific component BioY of biotin ECF transporter	Oenococcus oeni PSU-1 Gene: OEOE_1597: Substrate-specific component BioY of biotin ECF transporter	*2 Pediococcus pentosaceus ATCC 25745 Site: position = -81 score = 8.64298 sequence = ATAGTAACC-(16)-GGTTACTAT Gene: PEPE_1637: Substrate-specific component BioY of biotin ECF transporter Gene: PEPE_1592: Substrate-specific component BioY of biotin ECF transporter	Substrate-specific component BioY of biotin ECF transporter
yemC	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_0338: Zinc finger protein	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0517: Zinc finger protein	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Zinc finger protein
birA	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956 Gene: LAF_0322: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15)	Lactobacillus helveticus DPC 4571 Gene: lhv_1921: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15)	Lactobacillus johnsonii NCC 533	*2 Lactobacillus plantarum WCFS1 Gene: lp_0337: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15) Site: position = -158 score = 7.66747 sequence = ATTGTACAC-(16)-GGTTACATT Site: position = -55 score = 8.08217 sequence = TTAGTTAAC-(16)-GTTAACTAA Gene: lp_0854: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15)	Lactobacillus reuteri JCM 1112 Gene: LAR_0705: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15)	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_0325: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15)	2 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0301: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15) Gene: LEUM_0518: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15)	* Oenococcus oeni PSU-1 Site: position = -48 score = 8.13696 sequence = TTAGTTAAC-(16)-GTTAACAAA Gene: OEOE_1596: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15)	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1636: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15)	Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15)

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD