Regulog BirA - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | BirA |
| Regulation mode: | repressor |
| Biological process: | Biotin biosynthesis |
| Effector: | Biotin |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By trascription factor - BirA
- By TF family - BirA
- By effector - Biotin
- By pathway - Biotin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus brevis ATCC 367 | ||
| Lactobacillus casei ATCC 334 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus fermentum IFO 3956 | 2 | 1 |
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | 4 | 2 |
| Lactobacillus reuteri JCM 1112 | 2 | 1 |
| Lactobacillus rhamnosus GG | ||
| Lactobacillus sakei subsp. sakei 23K | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | 1 | 1 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 4 | 2 |
| Oenococcus oeni PSU-1 | 2 | 1 |
| Pediococcus pentosaceus ATCC 25745 | 2 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| bioY |
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Gene: LVIS_0923: Substrate-specific component BioY of biotin ECF transporter |
Gene: LSEI_2218: Substrate-specific component BioY of biotin ECF transporter |
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Lactobacillus fermentum IFO 3956 Site: position = -54 score = 8.47466 sequence = ATTGTAACC-(16)-GGTTACAAA Gene: LAF_0321: Substrate-specific component BioY of biotin ECF transporter |
Gene: lhv_1920: Substrate-specific component BioY of biotin ECF transporter |
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Lactobacillus plantarum WCFS1 Site: position = -76 score = 7.72647 sequence = ACAGTAACC-(16)-GGTTACTGT Gene: lp_0336: Substrate-specific component BioY of biotin ECF transporter |
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Lactobacillus reuteri JCM 1112 Site: position = -71 score = 8.69776 sequence = ATAGTAACC-(16)-GGTTACAAT Gene: LAR_0704: Substrate-specific component BioY of biotin ECF transporter |
Gene: LGG_02223: Substrate-specific component BioY of biotin ECF transporter |
Gene: LSA0825: Substrate-specific component BioY of biotin ECF transporter |
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Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -91 score = 8.19175 sequence = ATTGTTAAC-(16)-GTTAACAAT Gene: LSL_0074: Substrate-specific component BioY of biotin ECF transporter |
*2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -124 score = 7.58107 sequence = TTTGTTAAC-(16)-GGTAACATA Gene: LEUM_0302: Substrate-specific component BioY of biotin ECF transporter Site: position = -45 score = 8.41961 sequence = TTAGTAAAC-(16)-GTTTACTAA Gene: LEUM_0516: Substrate-specific component BioY of biotin ECF transporter |
Gene: OEOE_1597: Substrate-specific component BioY of biotin ECF transporter |
*2
Pediococcus pentosaceus ATCC 25745 Site: position = -81 score = 8.64298 sequence = ATAGTAACC-(16)-GGTTACTAT Gene: PEPE_1637: Substrate-specific component BioY of biotin ECF transporter Gene: PEPE_1592: Substrate-specific component BioY of biotin ECF transporter |
Substrate-specific component BioY of biotin ECF transporter |
| yemC |
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Gene: lp_0338: Zinc finger protein |
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Gene: LEUM_0517: Zinc finger protein |
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Zinc finger protein |
| birA |
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Gene: LAF_0322: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15) |
Gene: lhv_1921: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15) |
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*2
Lactobacillus plantarum WCFS1 Gene: lp_0337: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15) Site: position = -158 score = 7.66747 sequence = ATTGTACAC-(16)-GGTTACATT Site: position = -55 score = 8.08217 sequence = TTAGTTAAC-(16)-GTTAACTAA Gene: lp_0854: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15) |
Gene: LAR_0705: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15) |
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Gene: LSL_0325: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15) |
2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0301: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15) Gene: LEUM_0518: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15) |
*
Oenococcus oeni PSU-1 Site: position = -48 score = 8.13696 sequence = TTAGTTAAC-(16)-GTTAACAAA Gene: OEOE_1596: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15) |
Gene: PEPE_1636: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15) |
Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |