Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LexA regulog to Lactobacillus casei ATCC 334

Reference regulog properties
Source regulog: LexA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus casei ATCC 334
Orthologous TF(s) LSEI_1968, LSEI_0730
Regulated genes 9
Built upon 99 sites [see more]
Predicted regulatory interactions in Lactobacillus casei ATCC 334
Locus tag Position Score Sequence
Position: -55
Score: 4.5
Sequence: GAGAATGTATGTTCTA
Locus tag: LSEI_0288
LSEI_0288 -55 4.5 GAGAATGTATGTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: srmB
Ortholog function: DinG family ATP-dependent helicase
Lactobacillus brevis ATCC 367 LVIS_1870 -70 4.1 TCGAACACGCGTTCAA
Lactobacillus casei ATCC 334 LSEI_0288 -55 4.5 GAGAATGTATGTTCTA
Lactobacillus plantarum WCFS1 lp_0308 -52 4.6 ACGAACAGATGTTTTA
Lactobacillus rhamnosus GG LGG_00328 -55 4.3 CAGAATGTATGTTCTA
Position: -61
Score: 5
Sequence: GCAAACGTTCGTTCGC
Locus tag: LSEI_0730
LSEI_0730 -61 5 GCAAACGTTCGTTCGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
Lactobacillus acidophilus NCFM LBA1280 -80 4.1 AAGAACGCCTGTTTGA
Lactobacillus casei ATCC 334 LSEI_1968 -53 4.1 TCAAAAGTTTTTTTGT
Lactobacillus casei ATCC 334 LSEI_0730 -61 5 GCAAACGTTCGTTCGC
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1265 -85 4.1 TAGAACGCCCGTTTGC
Lactobacillus fermentum IFO 3956 LAF_0708 -79 4.9 TCGAACGTACGTTTTA
Lactobacillus helveticus DPC 4571 lhv_1364 -82 4.8 TAGAACATTCGTTTGA
Lactobacillus johnsonii NCC 533 LJ1508 -71 4.1 AAGAACGCCTGTTTGC
Lactobacillus plantarum WCFS1 lp_2063 -81 5 CCGAACATTTGTTTGA
Lactobacillus reuteri JCM 1112 LAR_0650 -71 5.2 GCGAACGTACGTTTGA
Lactobacillus rhamnosus GG LGG_00717 -60 4.7 GCAAACGTCCGTTCGT
Lactobacillus sakei subsp. sakei 23K LSA1275 -70 4.7 ACGAACACTTGTTTGA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0540 -74 4.6 ACGAACGTTAGTTTGA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1204 -75 5 ACGAACAAACGTTTGA
Oenococcus oeni PSU-1 OEOE_0970 -76 4.9 ACGAACATGTGTTTGT
Pediococcus pentosaceus ATCC 25745 PEPE_0870 -68 5.1 GCGAACATTTGTTTGA
Position: -127
Score: 4.2
Sequence: ACGAAATTTTGTTTGG
Locus tag: LSEI_0956
LSEI_0956 -127 4.2 ACGAAATTTTGTTTGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrB
Ortholog function: Excinuclease ABC, subunit B
Lactobacillus acidophilus NCFM LBA0688 -87 4.6 GCGAAAACACGTTCGT
Lactobacillus brevis ATCC 367 LVIS_0648 -101 4.9 GCGAAAGTATGTTCGG
Lactobacillus casei ATCC 334 LSEI_0956 -206 5 GCGAAAGTATGTTCGC
-127 4.2 ACGAAATTTTGTTTGG
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0549 -64 4.1 TAGAATCTATGTTCGG
Lactobacillus fermentum IFO 3956 LAF_0353 -99 4.7 ACGAATAAACGTTCGT
Lactobacillus helveticus DPC 4571 lhv_0729 -86 4.6 GCGAAAACACGTTCGT
Lactobacillus johnsonii NCC 533 LJ0863 -86 5 GCGAAAATACGTTCGC
Lactobacillus plantarum WCFS1 lp_0772 -146 5 GCGAAAGTATGTTCGA
Lactobacillus reuteri JCM 1112 LAR_0372 -132 4.4 ACGAATACATGTTTGG
Lactobacillus rhamnosus GG LGG_00923 -271 5 GCGAAAGTATGTTCGC
Lactobacillus sakei subsp. sakei 23K LSA0523 -190 4.9 GCGAAAATACGTTCGG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0392 -89 4.9 TAGAACGTTTGTTCGT
Oenococcus oeni PSU-1 OEOE_0372 -50 4.2 GGGAACTAATGTTCGC
Pediococcus pentosaceus ATCC 25745 PEPE_0448 -127 4.9 GCGAAAGTATGTTCGG
Position: -40
Score: 5.2
Sequence: GCAAACGTATGTTCGT
Locus tag: LSEI_1049
LSEI_1049 -40 5.2 GCAAACGTATGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: umuC
Ortholog function: UV-damage repair protein
Lactobacillus casei ATCC 334 LSEI_1049 -40 5.2 GCAAACGTATGTTCGT
Lactobacillus rhamnosus GG LGG_01010 -40 5.2 GCAAACATACGTTCGT
Position: -29
Score: 4.9
Sequence: GCGAACATTTGTTTTA
Locus tag: LSEI_1346
LSEI_1346 -29 4.9 GCGAACATTTGTTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrC
Ortholog function: Nuclease subunit of the excinuclease complex
Lactobacillus brevis ATCC 367 LVIS_1383 -64 4.4 CCAAACAAACATTCGG
Lactobacillus casei ATCC 334 LSEI_1346 -29 4.9 GCGAACATTTGTTTTA
Lactobacillus rhamnosus GG LGG_01358 -29 4.9 GCGAACATTTGTTTTA
Lactobacillus sakei subsp. sakei 23K LSA1055 -35 4.4 ACGAACACTTGTTTTG
Pediococcus pentosaceus ATCC 25745 PEPE_1135 16 3.9 TTGAACATAAGTTGGC
Position: -26
Score: 5
Sequence: GAAAACATACGTTCGA
Locus tag: LSEI_1415
LSEI_1415 -26 5 GAAAACATACGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xerC
Ortholog function: Site-specific DNA-tyrosine recombinase, XerC
Lactobacillus brevis ATCC 367 LVIS_0812 -112 4.1 TAAAACAAATATTTTA
-27 4.7 CAGAACATACGTTTGG
Lactobacillus casei ATCC 334 LSEI_1415 -26 5 GAAAACATACGTTCGA
Lactobacillus helveticus DPC 4571 lhv_1253 -77 4.9 TAAAACATTTGTTCGA
Lactobacillus johnsonii NCC 533 LJ1177 -28 4.7 ACAAACCTACGTTCGA
Lactobacillus rhamnosus GG LGG_01425 -27 5.1 GAAAACATATGTTCGA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1797 -25 4.5 TCAAATGAATGTTCGG
Position: -26
Score: 5
Sequence: ACAAACAAATGTTCGG
Locus tag: LSEI_1631
LSEI_1631 -26 5 ACAAACAAATGTTCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: LJ1544
Ortholog function: hypothetical protein
Lactobacillus casei ATCC 334 LSEI_1631 -53 4.3 TTGAACACTTGTTCGT
-26 5 ACAAACAAATGTTCGG
Lactobacillus rhamnosus GG LGG_01676 -53 4.5 TTGAACACATGTTCGT
-26 4.9 ACAAACAAACGTTCGG
Lactobacillus sakei subsp. sakei 23K LSA0683 -56 4.9 TAGAACGTTTGTTCGT
-29 5 ACAAACAAATGTTCGG
Position: -53
Score: 4.1
Sequence: TCAAAAGTTTTTTTGT
Locus tag: LSEI_1968
LSEI_1968 -53 4.1 TCAAAAGTTTTTTTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
Lactobacillus acidophilus NCFM LBA1280 -80 4.1 AAGAACGCCTGTTTGA
Lactobacillus casei ATCC 334 LSEI_1968 -53 4.1 TCAAAAGTTTTTTTGT
Lactobacillus casei ATCC 334 LSEI_0730 -61 5 GCAAACGTTCGTTCGC
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1265 -85 4.1 TAGAACGCCCGTTTGC
Lactobacillus fermentum IFO 3956 LAF_0708 -79 4.9 TCGAACGTACGTTTTA
Lactobacillus helveticus DPC 4571 lhv_1364 -82 4.8 TAGAACATTCGTTTGA
Lactobacillus johnsonii NCC 533 LJ1508 -71 4.1 AAGAACGCCTGTTTGC
Lactobacillus plantarum WCFS1 lp_2063 -81 5 CCGAACATTTGTTTGA
Lactobacillus reuteri JCM 1112 LAR_0650 -71 5.2 GCGAACGTACGTTTGA
Lactobacillus rhamnosus GG LGG_00717 -60 4.7 GCAAACGTCCGTTCGT
Lactobacillus sakei subsp. sakei 23K LSA1275 -70 4.7 ACGAACACTTGTTTGA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0540 -74 4.6 ACGAACGTTAGTTTGA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1204 -75 5 ACGAACAAACGTTTGA
Oenococcus oeni PSU-1 OEOE_0970 -76 4.9 ACGAACATGTGTTTGT
Pediococcus pentosaceus ATCC 25745 PEPE_0870 -68 5.1 GCGAACATTTGTTTGA
Position: -221
Score: 4.8
Sequence: ACAAACGCATGTTCGA
Locus tag: LSEI_2649
LSEI_2649 -221 4.8 ACAAACGCATGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: DNA recombinase A
Lactobacillus casei ATCC 334 LSEI_2649 -221 4.8 ACAAACGCATGTTCGA
Lactobacillus rhamnosus GG LGG_02643 -69 4.4 ACAAACGCGTGTTCGA
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