Propagation of LexA regulog to Lactobacillus casei ATCC 334
| Source regulog: | LexA - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus casei ATCC 334 |
| Orthologous TF(s) | LSEI_1968, LSEI_0730 |
| Regulated genes | 9 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -55
Score: 4.5 Sequence: GAGAATGTATGTTCTA
Locus tag: LSEI_0288
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| LSEI_0288 | -55 | 4.5 | GAGAATGTATGTTCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: srmB | ||||
| Ortholog function: DinG family ATP-dependent helicase | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1870 | -70 | 4.1 | TCGAACACGCGTTCAA |
| Lactobacillus casei ATCC 334 | LSEI_0288 | -55 | 4.5 | GAGAATGTATGTTCTA |
| Lactobacillus plantarum WCFS1 | lp_0308 | -52 | 4.6 | ACGAACAGATGTTTTA |
| Lactobacillus rhamnosus GG | LGG_00328 | -55 | 4.3 | CAGAATGTATGTTCTA |
|
Position: -61
Score: 5 Sequence: GCAAACGTTCGTTCGC
Locus tag: LSEI_0730
|
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| LSEI_0730 | -61 | 5 | GCAAACGTTCGTTCGC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lexA | ||||
| Ortholog function: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) | ||||
| Lactobacillus acidophilus NCFM | LBA1280 | -80 | 4.1 | AAGAACGCCTGTTTGA |
| Lactobacillus casei ATCC 334 | LSEI_1968 | -53 | 4.1 | TCAAAAGTTTTTTTGT |
| Lactobacillus casei ATCC 334 | LSEI_0730 | -61 | 5 | GCAAACGTTCGTTCGC |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_1265 | -85 | 4.1 | TAGAACGCCCGTTTGC |
| Lactobacillus fermentum IFO 3956 | LAF_0708 | -79 | 4.9 | TCGAACGTACGTTTTA |
| Lactobacillus helveticus DPC 4571 | lhv_1364 | -82 | 4.8 | TAGAACATTCGTTTGA |
| Lactobacillus johnsonii NCC 533 | LJ1508 | -71 | 4.1 | AAGAACGCCTGTTTGC |
| Lactobacillus plantarum WCFS1 | lp_2063 | -81 | 5 | CCGAACATTTGTTTGA |
| Lactobacillus reuteri JCM 1112 | LAR_0650 | -71 | 5.2 | GCGAACGTACGTTTGA |
| Lactobacillus rhamnosus GG | LGG_00717 | -60 | 4.7 | GCAAACGTCCGTTCGT |
| Lactobacillus sakei subsp. sakei 23K | LSA1275 | -70 | 4.7 | ACGAACACTTGTTTGA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0540 | -74 | 4.6 | ACGAACGTTAGTTTGA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1204 | -75 | 5 | ACGAACAAACGTTTGA |
| Oenococcus oeni PSU-1 | OEOE_0970 | -76 | 4.9 | ACGAACATGTGTTTGT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0870 | -68 | 5.1 | GCGAACATTTGTTTGA |
|
Position: -127
Score: 4.2 Sequence: ACGAAATTTTGTTTGG
Locus tag: LSEI_0956
|
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| LSEI_0956 | -127 | 4.2 | ACGAAATTTTGTTTGG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uvrB | ||||
| Ortholog function: Excinuclease ABC, subunit B | ||||
| Lactobacillus acidophilus NCFM | LBA0688 | -87 | 4.6 | GCGAAAACACGTTCGT |
| Lactobacillus brevis ATCC 367 | LVIS_0648 | -101 | 4.9 | GCGAAAGTATGTTCGG |
| Lactobacillus casei ATCC 334 | LSEI_0956 | -206 | 5 | GCGAAAGTATGTTCGC |
| -127 | 4.2 | ACGAAATTTTGTTTGG | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_0549 | -64 | 4.1 | TAGAATCTATGTTCGG |
| Lactobacillus fermentum IFO 3956 | LAF_0353 | -99 | 4.7 | ACGAATAAACGTTCGT |
| Lactobacillus helveticus DPC 4571 | lhv_0729 | -86 | 4.6 | GCGAAAACACGTTCGT |
| Lactobacillus johnsonii NCC 533 | LJ0863 | -86 | 5 | GCGAAAATACGTTCGC |
| Lactobacillus plantarum WCFS1 | lp_0772 | -146 | 5 | GCGAAAGTATGTTCGA |
| Lactobacillus reuteri JCM 1112 | LAR_0372 | -132 | 4.4 | ACGAATACATGTTTGG |
| Lactobacillus rhamnosus GG | LGG_00923 | -271 | 5 | GCGAAAGTATGTTCGC |
| Lactobacillus sakei subsp. sakei 23K | LSA0523 | -190 | 4.9 | GCGAAAATACGTTCGG |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0392 | -89 | 4.9 | TAGAACGTTTGTTCGT |
| Oenococcus oeni PSU-1 | OEOE_0372 | -50 | 4.2 | GGGAACTAATGTTCGC |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0448 | -127 | 4.9 | GCGAAAGTATGTTCGG |
|
Position: -40
Score: 5.2 Sequence: GCAAACGTATGTTCGT
Locus tag: LSEI_1049
|
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| LSEI_1049 | -40 | 5.2 | GCAAACGTATGTTCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: umuC | ||||
| Ortholog function: UV-damage repair protein | ||||
| Lactobacillus casei ATCC 334 | LSEI_1049 | -40 | 5.2 | GCAAACGTATGTTCGT |
| Lactobacillus rhamnosus GG | LGG_01010 | -40 | 5.2 | GCAAACATACGTTCGT |
|
Position: -29
Score: 4.9 Sequence: GCGAACATTTGTTTTA
Locus tag: LSEI_1346
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| LSEI_1346 | -29 | 4.9 | GCGAACATTTGTTTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uvrC | ||||
| Ortholog function: Nuclease subunit of the excinuclease complex | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1383 | -64 | 4.4 | CCAAACAAACATTCGG |
| Lactobacillus casei ATCC 334 | LSEI_1346 | -29 | 4.9 | GCGAACATTTGTTTTA |
| Lactobacillus rhamnosus GG | LGG_01358 | -29 | 4.9 | GCGAACATTTGTTTTA |
| Lactobacillus sakei subsp. sakei 23K | LSA1055 | -35 | 4.4 | ACGAACACTTGTTTTG |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1135 | 16 | 3.9 | TTGAACATAAGTTGGC |
|
Position: -26
Score: 5 Sequence: GAAAACATACGTTCGA
Locus tag: LSEI_1415
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| LSEI_1415 | -26 | 5 | GAAAACATACGTTCGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xerC | ||||
| Ortholog function: Site-specific DNA-tyrosine recombinase, XerC | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0812 | -112 | 4.1 | TAAAACAAATATTTTA |
| -27 | 4.7 | CAGAACATACGTTTGG | ||
| Lactobacillus casei ATCC 334 | LSEI_1415 | -26 | 5 | GAAAACATACGTTCGA |
| Lactobacillus helveticus DPC 4571 | lhv_1253 | -77 | 4.9 | TAAAACATTTGTTCGA |
| Lactobacillus johnsonii NCC 533 | LJ1177 | -28 | 4.7 | ACAAACCTACGTTCGA |
| Lactobacillus rhamnosus GG | LGG_01425 | -27 | 5.1 | GAAAACATATGTTCGA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1797 | -25 | 4.5 | TCAAATGAATGTTCGG |
|
Position: -26
Score: 5 Sequence: ACAAACAAATGTTCGG
Locus tag: LSEI_1631
|
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| LSEI_1631 | -26 | 5 | ACAAACAAATGTTCGG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: LJ1544 | ||||
| Ortholog function: hypothetical protein | ||||
| Lactobacillus casei ATCC 334 | LSEI_1631 | -53 | 4.3 | TTGAACACTTGTTCGT |
| -26 | 5 | ACAAACAAATGTTCGG | ||
| Lactobacillus rhamnosus GG | LGG_01676 | -53 | 4.5 | TTGAACACATGTTCGT |
| -26 | 4.9 | ACAAACAAACGTTCGG | ||
| Lactobacillus sakei subsp. sakei 23K | LSA0683 | -56 | 4.9 | TAGAACGTTTGTTCGT |
| -29 | 5 | ACAAACAAATGTTCGG | ||
|
Position: -53
Score: 4.1 Sequence: TCAAAAGTTTTTTTGT
Locus tag: LSEI_1968
|
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| LSEI_1968 | -53 | 4.1 | TCAAAAGTTTTTTTGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lexA | ||||
| Ortholog function: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) | ||||
| Lactobacillus acidophilus NCFM | LBA1280 | -80 | 4.1 | AAGAACGCCTGTTTGA |
| Lactobacillus casei ATCC 334 | LSEI_1968 | -53 | 4.1 | TCAAAAGTTTTTTTGT |
| Lactobacillus casei ATCC 334 | LSEI_0730 | -61 | 5 | GCAAACGTTCGTTCGC |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_1265 | -85 | 4.1 | TAGAACGCCCGTTTGC |
| Lactobacillus fermentum IFO 3956 | LAF_0708 | -79 | 4.9 | TCGAACGTACGTTTTA |
| Lactobacillus helveticus DPC 4571 | lhv_1364 | -82 | 4.8 | TAGAACATTCGTTTGA |
| Lactobacillus johnsonii NCC 533 | LJ1508 | -71 | 4.1 | AAGAACGCCTGTTTGC |
| Lactobacillus plantarum WCFS1 | lp_2063 | -81 | 5 | CCGAACATTTGTTTGA |
| Lactobacillus reuteri JCM 1112 | LAR_0650 | -71 | 5.2 | GCGAACGTACGTTTGA |
| Lactobacillus rhamnosus GG | LGG_00717 | -60 | 4.7 | GCAAACGTCCGTTCGT |
| Lactobacillus sakei subsp. sakei 23K | LSA1275 | -70 | 4.7 | ACGAACACTTGTTTGA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0540 | -74 | 4.6 | ACGAACGTTAGTTTGA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1204 | -75 | 5 | ACGAACAAACGTTTGA |
| Oenococcus oeni PSU-1 | OEOE_0970 | -76 | 4.9 | ACGAACATGTGTTTGT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0870 | -68 | 5.1 | GCGAACATTTGTTTGA |
|
Position: -221
Score: 4.8 Sequence: ACAAACGCATGTTCGA
Locus tag: LSEI_2649
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| LSEI_2649 | -221 | 4.8 | ACAAACGCATGTTCGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: recA | ||||
| Ortholog function: DNA recombinase A | ||||
| Lactobacillus casei ATCC 334 | LSEI_2649 | -221 | 4.8 | ACAAACGCATGTTCGA |
| Lactobacillus rhamnosus GG | LGG_02643 | -69 | 4.4 | ACAAACGCGTGTTCGA |