Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NihR regulog to Lactobacillus brevis ATCC 367

Reference regulog properties
Source regulog: NihR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nickel homeostasis
Effector:
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus brevis ATCC 367
Orthologous TF(s) LVIS_1848
Regulated genes 2
Built upon 10 sites [see more]
Predicted regulatory interactions in Lactobacillus brevis ATCC 367
Locus tag Position Score Sequence
Position: -87
Score: 4.7
Sequence: ATTACCAAATGTTAAG
Locus tag: LVIS_1848
LVIS_1848 -87 4.7 ATTACCAAATGTTAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nihR
Ortholog function: Predicted transcriptional regulator for nickel homeostasis, Crp family
Lactobacillus brevis ATCC 367 LVIS_1848 -87 4.7 ATTACCAAATGTTAAG
Lactobacillus fermentum IFO 3956 LAF_1734 -129 4.4 TGTTACATAAGGAAAA
Lactobacillus plantarum WCFS1 lp_0103 -148 4.8 GTTAACAAATGTATAC
Lactobacillus sakei subsp. sakei 23K LSA0783 -101 5 GTTAACAAATGTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1695 -91 4.9 TATAACATTTGTTACA
Position: -134
Score: 4.7
Sequence: CTTAACATTTGGTAAT
Locus tag: LVIS_1849
LVIS_1849 -134 4.7 CTTAACATTTGGTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: PF09861
Ortholog function: Conserved hypothetical protein, PF09861 family
Lactobacillus brevis ATCC 367 LVIS_1849 -134 4.7 CTTAACATTTGGTAAT
Lactobacillus fermentum IFO 3956 LAF_1733 -127 4.4 TTTTCCTTATGTAACA
Lactobacillus plantarum WCFS1 lp_0104 -120 4.8 GTATACATTTGTTAAC
Lactobacillus sakei subsp. sakei 23K LSA0784 -148 5 TTGAACATTTGTTAAC
Pediococcus pentosaceus ATCC 25745 PEPE_1694 -95 4.9 TGTAACAAATGTTATA
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