Regulog NihR - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Nickel homeostasis |
| Effector: | |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By TF family - CRP
- By pathway - Nickel homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus brevis ATCC 367 | 7 | 2 |
| Lactobacillus casei ATCC 334 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus fermentum IFO 3956 | 7 | 2 |
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | 6 | 2 |
| Lactobacillus reuteri JCM 1112 | ||
| Lactobacillus rhamnosus GG | ||
| Lactobacillus sakei subsp. sakei 23K | 11 | 2 |
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | ||
| Oenococcus oeni PSU-1 | ||
| Pediococcus pentosaceus ATCC 25745 | 7 | 2 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| PF09861 |
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Lactobacillus brevis ATCC 367 Site: position = -134 score = 4.67889 sequence = CTTAACATTTGGTAAT Gene: LVIS_1849: Conserved hypothetical protein, PF09861 family |
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Lactobacillus fermentum IFO 3956 Site: position = -127 score = 4.3771 sequence = TTTTCCTTATGTAACA Gene: LAF_1733: Conserved hypothetical protein, PF09861 family |
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Lactobacillus plantarum WCFS1 Site: position = -120 score = 4.77519 sequence = GTATACATTTGTTAAC Gene: lp_0104: Conserved hypothetical protein, PF09861 family |
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Lactobacillus sakei subsp. sakei 23K Site: position = -148 score = 5.02565 sequence = TTGAACATTTGTTAAC Gene: LSA0784: Conserved hypothetical protein, PF09861 family |
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Pediococcus pentosaceus ATCC 25745 Site: position = -95 score = 4.91674 sequence = TGTAACAAATGTTATA Gene: PEPE_1694: Conserved hypothetical protein, PF09861 family |
Conserved hypothetical protein, PF09861 family |
| PF00731 |
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Gene: LVIS_1850: Predicted enzyme, PF00731 family |
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Gene: LAF_1732: Predicted enzyme, PF00731 family |
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Gene: lp_0105: Predicted enzyme, PF00731 family |
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Gene: LSA0785: Predicted enzyme, PF00731 family |
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Gene: PEPE_1693: Predicted enzyme, PF00731 family |
Predicted enzyme, PF00731 family |
| PF01969 |
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Gene: LVIS_1851: Conserved hypothetical protein, PF01969 family |
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Gene: LAF_1731: Conserved hypothetical protein, PF01969 family |
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2
Lactobacillus sakei subsp. sakei 23K Gene: LSA0786: Conserved hypothetical protein, PF01969 family Gene: LSA0787: Conserved hypothetical protein, PF01969 family |
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Gene: PEPE_1692: Conserved hypothetical protein, PF01969 family |
Conserved hypothetical protein, PF01969 family |
| LSA0788 |
Gene: LBA1595: Predicted glycerol uptake facilitator protein |
Gene: LVIS_1853: Predicted glycerol uptake facilitator protein |
Gene: LSEI_0801: Predicted glycerol uptake facilitator protein |
Gene: LBUL_0058: Predicted glycerol uptake facilitator protein |
Gene: LAF_1730: Predicted glycerol uptake facilitator protein |
Gene: lhv_1671: Predicted glycerol uptake facilitator protein |
Gene: LJ0700: Predicted glycerol uptake facilitator protein |
3
Lactobacillus plantarum WCFS1 Gene: lp_0108: Predicted glycerol uptake facilitator protein Gene: lp_3436: Predicted glycerol uptake facilitator protein Gene: lp_1175: Predicted glycerol uptake facilitator protein |
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Gene: LGG_00784: Predicted glycerol uptake facilitator protein |
2
Lactobacillus sakei subsp. sakei 23K Gene: LSA0788: Predicted glycerol uptake facilitator protein Gene: LSA1170: Predicted glycerol uptake facilitator protein |
Gene: LSL_0466: Predicted glycerol uptake facilitator protein |
Gene: LEUM_1392: Predicted glycerol uptake facilitator protein |
Gene: OEOE_0349: Predicted glycerol uptake facilitator protein |
2
Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1691: Predicted glycerol uptake facilitator protein Gene: PEPE_1249: Predicted glycerol uptake facilitator protein |
Predicted glycerol uptake facilitator protein |
| LSA0789 |
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Gene: LSA0789: Hypothetical protein |
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Hypothetical protein |
| LSA0790 |
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Gene: LVIS_1852: ATP-utilizing enzyme of the PP-loop superfamily |
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Gene: LAF_1729: ATP-utilizing enzyme of the PP-loop superfamily |
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Gene: lp_0109: ATP-utilizing enzyme of the PP-loop superfamily |
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Gene: LSA0790: ATP-utilizing enzyme of the PP-loop superfamily |
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Gene: PEPE_1690: ATP-utilizing enzyme of the PP-loop superfamily |
ATP-utilizing enzyme of the PP-loop superfamily |
| nixA |
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Gene: LVIS_1854: High-affinity nickel permease |
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Gene: LAF_1728: High-affinity nickel permease |
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Gene: LEUM_2023: High-affinity nickel permease |
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Gene: PEPE_1696: High-affinity nickel permease |
High-affinity nickel permease |
| nihR |
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Lactobacillus brevis ATCC 367 Site: position = -87 score = 4.67889 sequence = ATTACCAAATGTTAAG Gene: LVIS_1848: Predicted transcriptional regulator for nickel homeostasis, Crp family |
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Lactobacillus fermentum IFO 3956 Site: position = -129 score = 4.3771 sequence = TGTTACATAAGGAAAA Gene: LAF_1734: Predicted transcriptional regulator for nickel homeostasis, Crp family |
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Lactobacillus plantarum WCFS1 Site: position = -148 score = 4.77519 sequence = GTTAACAAATGTATAC Gene: lp_0103: Predicted transcriptional regulator for nickel homeostasis, Crp family |
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Lactobacillus sakei subsp. sakei 23K Site: position = -101 score = 5.02565 sequence = GTTAACAAATGTTCAA Gene: LSA0783: Predicted transcriptional regulator for nickel homeostasis, Crp family |
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Pediococcus pentosaceus ATCC 25745 Site: position = -91 score = 4.91674 sequence = TATAACATTTGTTACA Gene: PEPE_1695: Predicted transcriptional regulator for nickel homeostasis, Crp family |
Predicted transcriptional regulator for nickel homeostasis, Crp family |
| nikM |
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Gene: lp_0102: Nickel ECF transporter, substrate-binding protein |
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Gene: LSA0782: Nickel ECF transporter, substrate-binding protein |
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Nickel ECF transporter, substrate-binding protein |
| nikQ |
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Gene: lp_0101: Nickel ECF transporter, transmembrane component |
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Gene: LSA0781: Nickel ECF transporter, transmembrane component |
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Nickel ECF transporter, transmembrane component |
| nikO |
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Gene: lp_0100: Nickel ECF transporter, ATP-binding protein |
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Gene: LSA0780: Nickel ECF transporter, ATP-binding protein |
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Nickel ECF transporter, ATP-binding protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |