Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LexA regulog to Lactobacillus rhamnosus GG

Reference regulog properties
Source regulog: LexA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus rhamnosus GG
Orthologous TF(s) LGG_00717
Regulated genes 8
Built upon 99 sites [see more]
Predicted regulatory interactions in Lactobacillus rhamnosus GG
Locus tag Position Score Sequence
Position: -55
Score: 4.3
Sequence: CAGAATGTATGTTCTA
Locus tag: LGG_00328
LGG_00328 -55 4.3 CAGAATGTATGTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: srmB
Ortholog function: DinG family ATP-dependent helicase
Lactobacillus brevis ATCC 367 LVIS_1870 -70 4.1 TCGAACACGCGTTCAA
Lactobacillus casei ATCC 334 LSEI_0288 -55 4.5 GAGAATGTATGTTCTA
Lactobacillus plantarum WCFS1 lp_0308 -52 4.6 ACGAACAGATGTTTTA
Lactobacillus rhamnosus GG LGG_00328 -55 4.3 CAGAATGTATGTTCTA
Position: -60
Score: 4.7
Sequence: GCAAACGTCCGTTCGT
Locus tag: LGG_00717
LGG_00717 -60 4.7 GCAAACGTCCGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
Lactobacillus acidophilus NCFM LBA1280 -80 4.1 AAGAACGCCTGTTTGA
Lactobacillus casei ATCC 334 LSEI_1968 -53 4.1 TCAAAAGTTTTTTTGT
Lactobacillus casei ATCC 334 LSEI_0730 -61 5 GCAAACGTTCGTTCGC
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1265 -85 4.1 TAGAACGCCCGTTTGC
Lactobacillus fermentum IFO 3956 LAF_0708 -79 4.9 TCGAACGTACGTTTTA
Lactobacillus helveticus DPC 4571 lhv_1364 -82 4.8 TAGAACATTCGTTTGA
Lactobacillus johnsonii NCC 533 LJ1508 -71 4.1 AAGAACGCCTGTTTGC
Lactobacillus plantarum WCFS1 lp_2063 -81 5 CCGAACATTTGTTTGA
Lactobacillus reuteri JCM 1112 LAR_0650 -71 5.2 GCGAACGTACGTTTGA
Lactobacillus rhamnosus GG LGG_00717 -60 4.7 GCAAACGTCCGTTCGT
Lactobacillus sakei subsp. sakei 23K LSA1275 -70 4.7 ACGAACACTTGTTTGA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0540 -74 4.6 ACGAACGTTAGTTTGA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1204 -75 5 ACGAACAAACGTTTGA
Oenococcus oeni PSU-1 OEOE_0970 -76 4.9 ACGAACATGTGTTTGT
Pediococcus pentosaceus ATCC 25745 PEPE_0870 -68 5.1 GCGAACATTTGTTTGA
Position: -40
Score: 5.2
Sequence: GCAAACATACGTTCGT
Locus tag: LGG_01010
LGG_01010 -40 5.2 GCAAACATACGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: umuC
Ortholog function: UV-damage repair protein
Lactobacillus casei ATCC 334 LSEI_1049 -40 5.2 GCAAACGTATGTTCGT
Lactobacillus rhamnosus GG LGG_01010 -40 5.2 GCAAACATACGTTCGT
Position: -29
Score: 4.9
Sequence: GCGAACATTTGTTTTA
Locus tag: LGG_01358
LGG_01358 -29 4.9 GCGAACATTTGTTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrC
Ortholog function: Nuclease subunit of the excinuclease complex
Lactobacillus brevis ATCC 367 LVIS_1383 -64 4.4 CCAAACAAACATTCGG
Lactobacillus casei ATCC 334 LSEI_1346 -29 4.9 GCGAACATTTGTTTTA
Lactobacillus rhamnosus GG LGG_01358 -29 4.9 GCGAACATTTGTTTTA
Lactobacillus sakei subsp. sakei 23K LSA1055 -35 4.4 ACGAACACTTGTTTTG
Pediococcus pentosaceus ATCC 25745 PEPE_1135 16 3.9 TTGAACATAAGTTGGC
Position: -179
Score: 4.5
Sequence: ACGAACACACATTCGA
Locus tag: LGG_01419
LGG_01419 -179 4.5 ACGAACACACATTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: parE
Ortholog function: Topoisomerase IV subunit B (EC 5.99.1.-)
Lactobacillus brevis ATCC 367 LVIS_0804 -70 4.7 TTGAACATACGTTCGG
Lactobacillus plantarum WCFS1 lp_1840 -185 4.9 GCGAACGTGTGTTTGC
Lactobacillus reuteri JCM 1112 LAR_0752 -45 4.6 TCGAACATACGTTTAG
Lactobacillus rhamnosus GG LGG_01419 -179 4.5 ACGAACACACATTCGA
Lactobacillus sakei subsp. sakei 23K LSA0976 -113 4.7 GCGAACATACATTTGG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1364 -36 4.3 ACGAACACTGGTTCGT
Oenococcus oeni PSU-1 OEOE_1026 -8 4.8 ACGAATGAATGTTCGC
Position: -27
Score: 5.1
Sequence: GAAAACATATGTTCGA
Locus tag: LGG_01425
LGG_01425 -27 5.1 GAAAACATATGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xerC
Ortholog function: Site-specific DNA-tyrosine recombinase, XerC
Lactobacillus brevis ATCC 367 LVIS_0812 -112 4.1 TAAAACAAATATTTTA
-27 4.7 CAGAACATACGTTTGG
Lactobacillus casei ATCC 334 LSEI_1415 -26 5 GAAAACATACGTTCGA
Lactobacillus helveticus DPC 4571 lhv_1253 -77 4.9 TAAAACATTTGTTCGA
Lactobacillus johnsonii NCC 533 LJ1177 -28 4.7 ACAAACCTACGTTCGA
Lactobacillus rhamnosus GG LGG_01425 -27 5.1 GAAAACATATGTTCGA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1797 -25 4.5 TCAAATGAATGTTCGG
Position: -26
Score: 4.9
Sequence: ACAAACAAACGTTCGG
Locus tag: LGG_01676
LGG_01676 -26 4.9 ACAAACAAACGTTCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: LJ1544
Ortholog function: hypothetical protein
Lactobacillus casei ATCC 334 LSEI_1631 -53 4.3 TTGAACACTTGTTCGT
-26 5 ACAAACAAATGTTCGG
Lactobacillus rhamnosus GG LGG_01676 -53 4.5 TTGAACACATGTTCGT
-26 4.9 ACAAACAAACGTTCGG
Lactobacillus sakei subsp. sakei 23K LSA0683 -56 4.9 TAGAACGTTTGTTCGT
-29 5 ACAAACAAATGTTCGG
Position: -69
Score: 4.4
Sequence: ACAAACGCGTGTTCGA
Locus tag: LGG_02643
LGG_02643 -69 4.4 ACAAACGCGTGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: DNA recombinase A
Lactobacillus casei ATCC 334 LSEI_2649 -221 4.8 ACAAACGCATGTTCGA
Lactobacillus rhamnosus GG LGG_02643 -69 4.4 ACAAACGCGTGTTCGA
© 2009-2020 RegPrecise