Propagation of ArgR regulog to Lactobacillus casei ATCC 334
| Source regulog: | ArgR - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | repressor, activator |
| Biological process: | Arginine degradation; Arginine biosynthesis |
| Effector: | Arginine |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus casei ATCC 334 |
| Orthologous TF(s) | LSEI_1727, LSEI_1634 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -77
Score: 3.8 Sequence: TTTGGAAAAATATGAATG
Position: -56
Score: 4.2 Sequence: ATTGCATAAAAATCAATT
Locus tag: LSEI_1344
|
||||
| LSEI_1344 | -77 | 3.8 | TTTGGAAAAATATGAATG | |
| -56 | 4.2 | ATTGCATAAAAATCAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: artPQ | ||||
| Ortholog function: Arginine ABC transporter, substrate-binding and permease protein | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1200 | -161 | 4.6 | AATGTATAAATTTTTATA |
| -96 | 4.9 | AGTGTATAAAAATAGATA | ||
| Lactobacillus casei ATCC 334 | LSEI_2810 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus casei ATCC 334 | LSEI_1344 | -56 | 4.2 | ATTGCATAAAAATCAATT |
| Lactobacillus plantarum WCFS1 | lp_2111 | -17 | 3.8 | CTTGCATAAATAATCATA |
| Lactobacillus reuteri JCM 1112 | LAR_0698 | -253 | 4.7 | ATTGCATAAATAAACATT |
| Lactobacillus rhamnosus GG | LGG_02816 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus rhamnosus GG | LGG_01356 | -56 | 4.3 | ATTGCATAAAAATTGAAT |
| Lactobacillus sakei subsp. sakei 23K | LSA1057 | -55 | 4.5 | ATTGCATAAATATTTATA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1541 | -162 | 3.5 | GTTACATAAATATATTTT |
| -82 | 4.3 | CTTGCATAAATAAACAAT | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0655 | -62 | 5.3 | ATTGTATAAAAATTCAAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1137 | -94 | 5.2 | AATGTATAAAAATTCATA |
|
Position: 7
Score: 3.2 Sequence: AACGTCAAGATATTCATA
Position: 11
Score: 3.2 Sequence: TCAAGATATTCATAAAAT
Locus tag: LSEI_1452
|
||||
| LSEI_1452 | 7 | 3.2 | AACGTCAAGATATTCATA | |
| 11 | 3.2 | TCAAGATATTCATAAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: carB | ||||
| Ortholog function: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) | ||||
| Lactobacillus fermentum IFO 3956 | LAF_0728 | -120 | 3.3 | CGTTCATAAATAACCAAT |
| Lactobacillus plantarum WCFS1 | lp_0526 | -169 | 4.9 | ATTGAAAAAATATTCATT |
| Lactobacillus reuteri JCM 1112 | LAR_0080 | -261 | 4.7 | TTTGCATAAAAATTCATT |
| -136 | 3.6 | CATACATATATATTCAAT | ||
|
Position: -46
Score: 4.4 Sequence: AATGAGTATATATTCAAT
Locus tag: LSEI_2810
|
||||
| LSEI_2810 | -46 | 4.4 | AATGAGTATATATTCAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: artPQ | ||||
| Ortholog function: Arginine ABC transporter, substrate-binding and permease protein | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1200 | -161 | 4.6 | AATGTATAAATTTTTATA |
| -96 | 4.9 | AGTGTATAAAAATAGATA | ||
| Lactobacillus casei ATCC 334 | LSEI_2810 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus casei ATCC 334 | LSEI_1344 | -56 | 4.2 | ATTGCATAAAAATCAATT |
| Lactobacillus plantarum WCFS1 | lp_2111 | -17 | 3.8 | CTTGCATAAATAATCATA |
| Lactobacillus reuteri JCM 1112 | LAR_0698 | -253 | 4.7 | ATTGCATAAATAAACATT |
| Lactobacillus rhamnosus GG | LGG_02816 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus rhamnosus GG | LGG_01356 | -56 | 4.3 | ATTGCATAAAAATTGAAT |
| Lactobacillus sakei subsp. sakei 23K | LSA1057 | -55 | 4.5 | ATTGCATAAATATTTATA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1541 | -162 | 3.5 | GTTACATAAATATATTTT |
| -82 | 4.3 | CTTGCATAAATAAACAAT | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0655 | -62 | 5.3 | ATTGTATAAAAATTCAAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1137 | -94 | 5.2 | AATGTATAAAAATTCATA |
|
Position: -19
Score: 3.1 Sequence: TAAGGAGGATTTTTAACT
Locus tag: LSEI_2811
|
||||
| LSEI_2811 | -19 | 3.1 | TAAGGAGGATTTTTAACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argG | ||||
| Ortholog function: Argininosuccinate synthase (EC 6.3.4.5) | ||||
| Lactobacillus casei ATCC 334 | LSEI_2811 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus fermentum IFO 3956 | LAF_1625 | -136 | 2.3 | CTTGCATTTTTATTTGAT |
| Lactobacillus plantarum WCFS1 | lp_0775 | -139 | 4.1 | TCTGCATAAAAATTCTAT |
| Lactobacillus reuteri JCM 1112 | LAR_0702 | -164 | 4.7 | ATTAAATAATTATTCTAT |
| Lactobacillus rhamnosus GG | LGG_02817 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0306 | -47 | 3.5 | AATGAATAGATTATGAAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1459 | -73 | 3.8 | ATTGCATATTTAATCAAA |