Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of BirA regulog to Lactobacillus plantarum JDM1

Reference regulog properties
Source regulog: BirA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: BirA
Regulation mode: repressor
Biological process: Biotin biosynthesis
Effector: Biotin
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus plantarum JDM1
Orthologous TF(s) JDM1_0712, JDM1_0301
Regulated genes 2
Built upon 10 sites [see more]
Predicted regulatory interactions in Lactobacillus plantarum JDM1
Locus tag Position Score Sequence
Position: -76
Score: 8.2
Sequence: ATAGTAACC-(16)-GGTTACTGT
Locus tag: JDM1_0299
JDM1_0299 -76 8.2 ATAGTAACC-(16)-GGTTACTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bioY
Ortholog function: Substrate-specific component BioY of biotin ECF transporter
Lactobacillus fermentum IFO 3956 LAF_0321 -54 8.5 ATTGTAACC-(16)-GGTTACAAA
Lactobacillus plantarum WCFS1 lp_0336 -76 7.7 ACAGTAACC-(16)-GGTTACTGT
Lactobacillus reuteri JCM 1112 LAR_0704 -71 8.7 ATAGTAACC-(16)-GGTTACAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0074 -91 8.2 ATTGTTAAC-(16)-GTTAACAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0516 -45 8.4 TTAGTAAAC-(16)-GTTTACTAA
Pediococcus pentosaceus ATCC 25745 PEPE_1637 -81 8.6 ATAGTAACC-(16)-GGTTACTAT
Position: -55
Score: 8.1
Sequence: TTAGTTAAC-(16)-GTTAACTAA
Locus tag: JDM1_0712
JDM1_0712 -55 8.1 TTAGTTAAC-(16)-GTTAACTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: birA
Ortholog function: Biotin biosynthesis repressor; Biotin-protein ligase (EC 6.3.4.15)
Lactobacillus fermentum IFO 3956 LAF_0322 -54 8.5 ATTGTAACC-(16)-GGTTACAAA
Lactobacillus plantarum WCFS1 lp_0854 -158 7.7 ATTGTACAC-(16)-GGTTACATT
-55 8.1 TTAGTTAAC-(16)-GTTAACTAA
Lactobacillus reuteri JCM 1112 LAR_0705 -71 8.7 ATAGTAACC-(16)-GGTTACAAT
Pediococcus pentosaceus ATCC 25745 PEPE_1636 -81 8.6 ATAGTAACC-(16)-GGTTACTAT