Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LexA regulog to Oenococcus oeni ATCC BAA-1163

Reference regulog properties
Source regulog: LexA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Firmicutes
Propagated regulon:
Target genome Oenococcus oeni ATCC BAA-1163
Orthologous TF(s) OENOO_56010
Regulated genes 6
Built upon 99 sites [see more]
Predicted regulatory interactions in Oenococcus oeni ATCC BAA-1163
Locus tag Position Score Sequence
Position: -124
Score: 3.8
Sequence: TCTAAAAAATGTTTTT
Locus tag: OENOO_53014
OENOO_53014 -124 3.8 TCTAAAAAATGTTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rheB
Ortholog function: Putative ATP-dependent DNA/RNA helicase
Lactobacillus brevis ATCC 367 LVIS_1224 -49 4.2 GCAAACGCCCGTTCGG
Lactobacillus plantarum WCFS1 lp_2278 -85 4.8 TTGAACGTATGTTCGT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1584 -32 3.9 AAGAACACTTGTTCCT
Position: -44
Score: 4.8
Sequence: TCGAACAAGCGTTCGT
Locus tag: OENOO_53062
OENOO_53062 -44 4.8 TCGAACAAGCGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: LJ1544
Ortholog function: hypothetical protein
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1714 -54 4.7 TTGAACATTTGTTCGT
Oenococcus oeni PSU-1 OEOE_1232 -44 4.8 TCGAACAAGCGTTCGT
Position: -76
Score: 4.9
Sequence: ACGAACATGTGTTTGT
Locus tag: OENOO_56010
OENOO_56010 -76 4.9 ACGAACATGTGTTTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
Lactobacillus acidophilus NCFM LBA1280 -80 4.1 AAGAACGCCTGTTTGA
Lactobacillus casei ATCC 334 LSEI_1968 -53 4.1 TCAAAAGTTTTTTTGT
Lactobacillus casei ATCC 334 LSEI_0730 -61 5 GCAAACGTTCGTTCGC
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1265 -85 4.1 TAGAACGCCCGTTTGC
Lactobacillus fermentum IFO 3956 LAF_0708 -79 4.9 TCGAACGTACGTTTTA
Lactobacillus helveticus DPC 4571 lhv_1364 -82 4.8 TAGAACATTCGTTTGA
Lactobacillus johnsonii NCC 533 LJ1508 -71 4.1 AAGAACGCCTGTTTGC
Lactobacillus plantarum WCFS1 lp_2063 -81 5 CCGAACATTTGTTTGA
Lactobacillus reuteri JCM 1112 LAR_0650 -71 5.2 GCGAACGTACGTTTGA
Lactobacillus rhamnosus GG LGG_00717 -60 4.7 GCAAACGTCCGTTCGT
Lactobacillus sakei subsp. sakei 23K LSA1275 -70 4.7 ACGAACACTTGTTTGA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0540 -74 4.6 ACGAACGTTAGTTTGA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1204 -75 5 ACGAACAAACGTTTGA
Oenococcus oeni PSU-1 OEOE_0970 -76 4.9 ACGAACATGTGTTTGT
Pediococcus pentosaceus ATCC 25745 PEPE_0870 -68 5.1 GCGAACATTTGTTTGA
Position: -8
Score: 4.8
Sequence: ACGAATGAATGTTCGC
Locus tag: OENOO_56063
OENOO_56063 -8 4.8 ACGAATGAATGTTCGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: parE
Ortholog function: Topoisomerase IV subunit B (EC 5.99.1.-)
Lactobacillus brevis ATCC 367 LVIS_0804 -70 4.7 TTGAACATACGTTCGG
Lactobacillus plantarum WCFS1 lp_1840 -185 4.9 GCGAACGTGTGTTTGC
Lactobacillus reuteri JCM 1112 LAR_0752 -45 4.6 TCGAACATACGTTTAG
Lactobacillus rhamnosus GG LGG_01419 -179 4.5 ACGAACACACATTCGA
Lactobacillus sakei subsp. sakei 23K LSA0976 -113 4.7 GCGAACATACATTTGG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1364 -36 4.3 ACGAACACTGGTTCGT
Oenococcus oeni PSU-1 OEOE_1026 -8 4.8 ACGAATGAATGTTCGC
Position: -50
Score: 4.2
Sequence: GGGAACTAATGTTCGC
Locus tag: OENOO_66069
OENOO_66069 -50 4.2 GGGAACTAATGTTCGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrA
Ortholog function: Excinuclease ABC, subunit A
Lactobacillus acidophilus NCFM LBA0689 -87 4.6 GCGAAAACACGTTCGT
Lactobacillus brevis ATCC 367 LVIS_0649 -101 4.9 GCGAAAGTATGTTCGG
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0550 -64 4.1 TAGAATCTATGTTCGG
Lactobacillus fermentum IFO 3956 LAF_0354 -99 4.7 ACGAATAAACGTTCGT
Lactobacillus helveticus DPC 4571 lhv_0730 -86 4.6 GCGAAAACACGTTCGT
Lactobacillus johnsonii NCC 533 LJ0864 -86 5 GCGAAAATACGTTCGC
Lactobacillus plantarum WCFS1 lp_0773 -146 5 GCGAAAGTATGTTCGA
Lactobacillus reuteri JCM 1112 LAR_0373 -132 4.4 ACGAATACATGTTTGG
Lactobacillus rhamnosus GG LGG_00924 -271 5 GCGAAAGTATGTTCGC
Lactobacillus sakei subsp. sakei 23K LSA0524 -190 4.9 GCGAAAATACGTTCGG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0393 -89 4.9 TAGAACGTTTGTTCGT
Oenococcus oeni PSU-1 OEOE_0374 -50 4.2 GGGAACTAATGTTCGC
Pediococcus pentosaceus ATCC 25745 PEPE_0449 -127 4.9 GCGAAAGTATGTTCGG