Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Oenococcus oeni ATCC BAA-1163

Reference regulog properties
Source regulog: CcpA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-bisphosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Oenococcus oeni ATCC BAA-1163
Orthologous TF(s) No orthologous TFs found
Regulated genes 18
Built upon 561 sites [see more]
Predicted regulatory interactions in Oenococcus oeni ATCC BAA-1163
Locus tag Position Score Sequence
Position: -289
Score: 5
Sequence: TTGAAAACGCTTCCAA
Locus tag: OENOO_27003
OENOO_27003 -289 5 TTGAAAACGCTTCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fmpB
Ortholog function: Predicted mannose specific PTS system, IIB component
Lactobacillus casei ATCC 334 LSEI_0560 -200 4.5 TTGTAAGCGTTAACCT
Lactobacillus johnsonii NCC 533 LJ1655 -82 4.2 CAGTAAACGATTACAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1272 -85 5 ATGCAAGCGCTTACAT
Position: -124
Score: 5
Sequence: ATGTAAACGATTTCAT
Locus tag: OENOO_33007
OENOO_33007 -124 5 ATGTAAACGATTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: LEUM_1316
Ortholog function: Beta-galactosidase (EC 3.2.1.23)
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1316 -77 4.8 AGGTAAGCGTTTACAT
Position: -152
Score: 5.3
Sequence: TTGAAAACGGTTTCAA
Position: -70
Score: 4.6
Sequence: TTGAAAGCGATTTTTT
Locus tag: OENOO_38006
OENOO_38006 -152 5.3 TTGAAAACGGTTTCAA
-70 4.6 TTGAAAGCGATTTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsI
Ortholog function: Phosphoenolpyruvate-protein kinase, PTS system component (EC 2.7.3.9)
Lactobacillus acidophilus NCFM LBA0640 -111 4.4 ATGTAAACTGTTACAT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0513 -108 4.7 ATGAAAACATTTACAA
Lactobacillus fermentum IFO 3956 LAF_1735 -119 4.3 TTTGAACCGGTTACAT
-73 4.2 ATGATAACGGTTTATA
Lactobacillus helveticus DPC 4571 lhv_0687 -109 4.4 ATGTAAGCTATTACAT
Lactobacillus johnsonii NCC 533 LJ0817 -109 4.6 ATGTAAACATTTACAT
Lactobacillus plantarum WCFS1 lp_1274 -135 4 ATGAAAGGGCTTGTAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0389 -91 4.1 TTGTTATCGTTTGCAT
-68 4.2 ATGTAAACGTGTTCTT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1779 -157 5.3 ATGTAAACGTTTTCAT
-63 4.7 TTGTAAGCGCTTTGAT
Oenococcus oeni PSU-1 OEOE_0647 -164 4.7 TTGAAAACAGTTTCAA
-82 4.5 TTGAAAACGATTTTTT
Pediococcus pentosaceus ATCC 25745 PEPE_0610 -127 4 ATGTAAGGGCTTGCTT
Position: -242
Score: 4.1
Sequence: ATGTAAGCCTTTGCAT
Locus tag: OENOO_40010
OENOO_40010 -242 4.1 ATGTAAGCCTTTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: manL
Ortholog function: Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM LBA0452 -42 4.5 ATAAAAGCGGATTCAT
Lactobacillus fermentum IFO 3956 LAF_0391 -140 4.7 TAGTAAGCGTTTACAG
Lactobacillus helveticus DPC 4571 lhv_0480 -42 4.5 ATAAAAGCGGATTCAT
Lactobacillus johnsonii NCC 533 LJ0503 -106 4.4 ATGCAAGCATTTTCAA
-68 4.1 AAGCAAACGTATACAT
Lactobacillus plantarum WCFS1 lp_0575 1 4 TGGTAAGCATTATCAT
Lactobacillus sakei subsp. sakei 23K LSA0449 -136 4.2 AGTAAAGCGTTTTAAA
-57 4.6 TTGTTAGCGTTTTTAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0086 -109 4.3 TAGAAATCGTTTACAC
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0654 -131 4.3 TAGTAAGTGTTTTCAA
-61 4.1 ATGAAAAGGCTTTATT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1768 -100 4.7 ATGTAAACGGTAACAA
-75 5.4 TTGAAAGCGTTTACAA
Pediococcus pentosaceus ATCC 25745 PEPE_1518 -146 4.5 TTGAAAGCGTTTTTTG
Position: -265
Score: 4
Sequence: TGGGAAACGCTTTATT
Position: -109
Score: 4.9
Sequence: TTGAAAGGGTTTTCAA
Locus tag: OENOO_43005
OENOO_43005 -265 4 TGGGAAACGCTTTATT
-109 4.9 TTGAAAGGGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpiA
Ortholog function: Ribose 5-phosphate isomerase A (EC 5.3.1.6)
Lactobacillus acidophilus NCFM LBA0588 -61 4.1 TTGGATGCGTTTTTTT
Lactobacillus sakei subsp. sakei 23K LSA1685 -65 4.4 TTTAAAGCGCTTTTTT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1806 -18 4.1 TTGAAAGGGGTATAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0793 -76 5.1 ATGGAAGCGTTTTCAA
Oenococcus oeni PSU-1 OEOE_1611 -110 4.7 TTGAAAGTGTTTTCAA
Position: -45
Score: 4.6
Sequence: TTGTAAACGTTTTAAG
Locus tag: OENOO_46033
OENOO_46033 -45 4.6 TTGTAAACGTTTTAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsR
Ortholog function: Ribose operon transcriptional regulator, LacI family
Lactobacillus casei ATCC 334 LSEI_0306 -88 4.5 TTGACAGCGCTTCCAA
Lactobacillus rhamnosus GG LGG_00372 -89 4.5 TTGACAGCGCTTCCAT
Lactobacillus sakei subsp. sakei 23K LSA0203 -114 4.3 TGTAAACCGTTTTCAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0795 -76 5.1 ATGGAAGCGTTTTCAA
Oenococcus oeni PSU-1 OEOE_0146 -45 4.6 TTGTAAACGTTTTAAG
Pediococcus pentosaceus ATCC 25745 PEPE_1700 -140 4.2 ATATAAGCGTTTAATT
Position: -66
Score: 4.5
Sequence: TGAAAAACGTTTTCAA
Locus tag: OENOO_49032
OENOO_49032 -66 4.5 TGAAAAACGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treR
Ortholog function: Trehalose utilization transcriptional regulator TreR, GntR family
Lactobacillus acidophilus NCFM LBA1013 -169 4.7 TATAAAGCGTTTTCAT
-102 4.5 TTGAAAGCGATCACAA
Lactobacillus casei ATCC 334 LSEI_0629 -90 4.2 TTAAAAGCGTTTAAAC
-27 4.3 GTGAAAGCGATTTCTG
Lactobacillus johnsonii NCC 533 LJ0759 4 4.4 AAGTATCCGCTTTCAT
Lactobacillus plantarum WCFS1 lp_0262 -29 4.7 ATGAAAACGATAACAA
Lactobacillus rhamnosus GG LGG_00601 -27 4.3 GTGAAAACGGTTACTG
Lactobacillus sakei subsp. sakei 23K LSA1201 -145 4.2 GTAAAAGCGCTTTCTG
-82 4.4 TTTGAACCGTTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1513 -130 4.2 ATGAAATTGTTTACAA
Oenococcus oeni PSU-1 OEOE_1339 -122 4.1 TTGAAAACGAAAACTT
-66 4.5 TGAAAAACGTTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1805 -177 4.7 TTGTAAGCGCTTGCTA
-34 4.6 ATGTAAGCGTTTCTAA
Position: 0
Score: 4.9
Sequence: ATGATAACGCTTACAT
Locus tag: OENOO_52016
OENOO_52016 0 4.9 ATGATAACGCTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pmi
Ortholog function: Mannose-6-phosphate isomerase (EC 5.3.1.8)
Lactobacillus acidophilus NCFM LBA0745 -58 4.3 AAGAAAAGGGTTTCAT
Lactobacillus brevis ATCC 367 LVIS_1656 -86 4.8 TAGAAAGCGCTTGCAA
Lactobacillus helveticus DPC 4571 lhv_0789 -58 4.3 AAGAAAAGGGTTTCAT
Lactobacillus johnsonii NCC 533 LJ0916 -60 4.6 TTGAAAGTGGTTTCAA
Lactobacillus sakei subsp. sakei 23K LSA1146 -99 4.1 ACGAAATCGCTTTAAA
Oenococcus oeni PSU-1 OEOE_0249 -30 4.9 ATGATAACGCTTACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1334 -21 4.3 ATGAAAGGGGTTTTAT
Position: -101
Score: 5.1
Sequence: TTGAAAGCGTTTCCAA
Locus tag: OENOO_57032
OENOO_57032 -101 5.1 TTGAAAGCGTTTCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cad
Ortholog function: Predicted pheromone precursor lipoprotein, related to Cad
Lactobacillus casei ATCC 334 LSEI_2296 -115 4.5 GAGAAAGCGCTTATAA
Lactobacillus rhamnosus GG LGG_02307 -115 4.5 GAGAAAGCGCTTATAA
Oenococcus oeni PSU-1 OEOE_1090 -237 4.2 TTGACACCGGTTTTAT
-101 5.1 TTGAAAGCGTTTCCAA
Position: -124
Score: 4.6
Sequence: TAGTAAACGTTTACTA
Position: -92
Score: 4.6
Sequence: TTGTAAACGTTTACTG
Position: -57
Score: 4.9
Sequence: TTGTAAACGTTTACTT
Locus tag: OENOO_62027
OENOO_62027 -124 4.6 TAGTAAACGTTTACTA
-92 4.6 TTGTAAACGTTTACTG
-57 4.9 TTGTAAACGTTTACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malT2
Ortholog function: Predicted maltose/maltodextrin permease
Lactobacillus brevis ATCC 367 LVIS_2179 -38 4.9 TTGAAAACGGTTACTT
Lactobacillus plantarum WCFS1 lp_3533 -104 4.6 GTGTAAACGTTTACTT
-72 4.7 TTGTAAACGTTTACGT
Oenococcus oeni PSU-1 OEOE_0041 -124 4.2 CAGTAAACGTTTACTA
-92 4.6 TTGTAAACGTTTACTG
-57 4.9 TTGTAAACGTTTACTT
Position: -148
Score: 4.9
Sequence: AAGTAAACGTTTACAA
Locus tag: OENOO_62028
OENOO_62028 -148 4.9 AAGTAAACGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: malR3
Ortholog function: Predicted maltose/maltodextrin utilization transcriptional regulator MalR3, LacI family
Oenococcus oeni PSU-1 OEOE_0042 -147 4.9 AAGTAAACGTTTACAA
-112 4.4 CAGTAAACGTTTACAA
Position: -53
Score: 5.1
Sequence: TTGAAAGCGCTTACAG
Locus tag: OENOO_66087
OENOO_66087 -53 5.1 TTGAAAGCGCTTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: lplA1
Ortholog function: Lipoate-protein ligase A
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0736 -31 4.9 GTGTAAGCGGTTACAA
Oenococcus oeni PSU-1 OEOE_0327 -53 5.1 TTGAAAGCGCTTACAG
Pediococcus pentosaceus ATCC 25745 PEPE_1774 -107 4 TTTAAAACATTTTAAA
-40 4.8 TAGAAAGCGCTTCCAT