Propagation of LexA regulog to Lactobacillus reuteri DSM 20016
| Source regulog: | LexA - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus reuteri DSM 20016 |
| Orthologous TF(s) | Lreu_0677 |
| Regulated genes | 6 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -67
Score: 4.8 Sequence: AAGAATATATGTTCGT
Locus tag: Lreu_0049
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| Lreu_0049 | -67 | 4.8 | AAGAATATATGTTCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: addB | ||||
| Ortholog function: ATP-dependent nuclease, subunit B | ||||
| Lactobacillus acidophilus NCFM | LBA1166 | -8 | 4.1 | GCGAACAAATGATCAA |
| Lactobacillus brevis ATCC 367 | LVIS_2268 | -202 | 4.4 | TTGAACGTGTGTTCGT |
| Lactobacillus fermentum IFO 3956 | LAF_0036 | -75 | 4.1 | GCGAACATTCATTCCC |
| Lactobacillus helveticus DPC 4571 | lhv_1274 | -8 | 4.1 | GCGAACAAATGATCAA |
| Lactobacillus plantarum WCFS1 | lp_2694 | -32 | 4.3 | GAGAACGTTTGTTCAG |
| Lactobacillus reuteri JCM 1112 | LAR_0047 | -67 | 4.8 | AAGAATATATGTTCGT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1482 | -62 | 4.3 | ACGAACAATCGTGCGC |
|
Position: -75
Score: 4.4 Sequence: ACGAATACATGTTTGG
Locus tag: Lreu_0383
|
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| Lreu_0383 | -75 | 4.4 | ACGAATACATGTTTGG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uvrB | ||||
| Ortholog function: Excinuclease ABC, subunit B | ||||
| Lactobacillus acidophilus NCFM | LBA0688 | -87 | 4.6 | GCGAAAACACGTTCGT |
| Lactobacillus brevis ATCC 367 | LVIS_0648 | -101 | 4.9 | GCGAAAGTATGTTCGG |
| Lactobacillus casei ATCC 334 | LSEI_0956 | -206 | 5 | GCGAAAGTATGTTCGC |
| -127 | 4.2 | ACGAAATTTTGTTTGG | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_0549 | -64 | 4.1 | TAGAATCTATGTTCGG |
| Lactobacillus fermentum IFO 3956 | LAF_0353 | -99 | 4.7 | ACGAATAAACGTTCGT |
| Lactobacillus helveticus DPC 4571 | lhv_0729 | -86 | 4.6 | GCGAAAACACGTTCGT |
| Lactobacillus johnsonii NCC 533 | LJ0863 | -86 | 5 | GCGAAAATACGTTCGC |
| Lactobacillus plantarum WCFS1 | lp_0772 | -146 | 5 | GCGAAAGTATGTTCGA |
| Lactobacillus reuteri JCM 1112 | LAR_0372 | -132 | 4.4 | ACGAATACATGTTTGG |
| Lactobacillus rhamnosus GG | LGG_00923 | -271 | 5 | GCGAAAGTATGTTCGC |
| Lactobacillus sakei subsp. sakei 23K | LSA0523 | -190 | 4.9 | GCGAAAATACGTTCGG |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0392 | -89 | 4.9 | TAGAACGTTTGTTCGT |
| Oenococcus oeni PSU-1 | OEOE_0372 | -50 | 4.2 | GGGAACTAATGTTCGC |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0448 | -127 | 4.9 | GCGAAAGTATGTTCGG |
|
Position: -89
Score: 4.3 Sequence: ACGAACTTTTGTTCAC
Locus tag: Lreu_0523
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| Lreu_0523 | -89 | 4.3 | ACGAACTTTTGTTCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: recA | ||||
| Ortholog function: DNA recombinase A | ||||
| Lactobacillus acidophilus NCFM | LBA0666 | -82 | 4.2 | TTGAACATTAGTTTGT |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_0535 | -84 | 4.1 | TTGAACGTTAGTTCGG |
| Lactobacillus fermentum IFO 3956 | LAF_0511 | -89 | 3.9 | CCGAACCCCTGTTCGA |
| Lactobacillus helveticus DPC 4571 | lhv_0713 | -82 | 4.1 | TTGAACGTTAGTTTGT |
| Lactobacillus plantarum WCFS1 | lp_2301 | -90 | 4.8 | ACGAACTTTTGTTCGC |
| Lactobacillus reuteri JCM 1112 | LAR_0509 | -89 | 4.3 | ACGAACTTTTGTTCAC |
| Lactobacillus sakei subsp. sakei 23K | LSA0487 | -94 | 4.9 | AAGAACGTTTGTTCGA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0584 | -82 | 5.2 | ACGAACAAATGTTCGA |
| Oenococcus oeni PSU-1 | OEOE_1382 | -57 | 5.2 | ACGAACAAATGTTCGT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1276 | -84 | 4.8 | TCGAACTTTTGTTCGC |
|
Position: -71
Score: 5.2 Sequence: GCGAACGTACGTTTGA
Locus tag: Lreu_0677
|
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| Lreu_0677 | -71 | 5.2 | GCGAACGTACGTTTGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lexA | ||||
| Ortholog function: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) | ||||
| Lactobacillus acidophilus NCFM | LBA1280 | -80 | 4.1 | AAGAACGCCTGTTTGA |
| Lactobacillus casei ATCC 334 | LSEI_1968 | -53 | 4.1 | TCAAAAGTTTTTTTGT |
| Lactobacillus casei ATCC 334 | LSEI_0730 | -61 | 5 | GCAAACGTTCGTTCGC |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_1265 | -85 | 4.1 | TAGAACGCCCGTTTGC |
| Lactobacillus fermentum IFO 3956 | LAF_0708 | -79 | 4.9 | TCGAACGTACGTTTTA |
| Lactobacillus helveticus DPC 4571 | lhv_1364 | -82 | 4.8 | TAGAACATTCGTTTGA |
| Lactobacillus johnsonii NCC 533 | LJ1508 | -71 | 4.1 | AAGAACGCCTGTTTGC |
| Lactobacillus plantarum WCFS1 | lp_2063 | -81 | 5 | CCGAACATTTGTTTGA |
| Lactobacillus reuteri JCM 1112 | LAR_0650 | -71 | 5.2 | GCGAACGTACGTTTGA |
| Lactobacillus rhamnosus GG | LGG_00717 | -60 | 4.7 | GCAAACGTCCGTTCGT |
| Lactobacillus sakei subsp. sakei 23K | LSA1275 | -70 | 4.7 | ACGAACACTTGTTTGA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0540 | -74 | 4.6 | ACGAACGTTAGTTTGA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1204 | -75 | 5 | ACGAACAAACGTTTGA |
| Oenococcus oeni PSU-1 | OEOE_0970 | -76 | 4.9 | ACGAACATGTGTTTGT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0870 | -68 | 5.1 | GCGAACATTTGTTTGA |
|
Position: -30
Score: 4.6 Sequence: TCGAACATACGTTTAG
Locus tag: Lreu_0782
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| Lreu_0782 | -30 | 4.6 | TCGAACATACGTTTAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: parE | ||||
| Ortholog function: Topoisomerase IV subunit B (EC 5.99.1.-) | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0804 | -70 | 4.7 | TTGAACATACGTTCGG |
| Lactobacillus plantarum WCFS1 | lp_1840 | -185 | 4.9 | GCGAACGTGTGTTTGC |
| Lactobacillus reuteri JCM 1112 | LAR_0752 | -45 | 4.6 | TCGAACATACGTTTAG |
| Lactobacillus rhamnosus GG | LGG_01419 | -179 | 4.5 | ACGAACACACATTCGA |
| Lactobacillus sakei subsp. sakei 23K | LSA0976 | -113 | 4.7 | GCGAACATACATTTGG |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1364 | -36 | 4.3 | ACGAACACTGGTTCGT |
| Oenococcus oeni PSU-1 | OEOE_1026 | -8 | 4.8 | ACGAATGAATGTTCGC |
|
Position: -59
Score: 4.8 Sequence: TTGAACATATGTTTGA
Locus tag: Lreu_1306
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| Lreu_1306 | -59 | 4.8 | TTGAACATATGTTTGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: umuC | ||||
| Ortholog function: UV-damage repair protein | ||||
| Lactobacillus fermentum IFO 3956 | LAF_1605 | -67 | 3.9 | CCGAACACTTGTTCCG |
| Lactobacillus plantarum WCFS1 | lp_3023 | -192 | 4.9 | AAGAACATATGTTCTT |
| Lactobacillus reuteri JCM 1112 | LAR_1238 | -59 | 4.8 | TTGAACATATGTTTGA |