Propagation of HrcA regulog to Lactobacillus fermentum IFO 3956
| Source regulog: | HrcA - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | HrcA |
| Regulation mode: | repressor |
| Biological process: | Heat shock response |
| Effector: | Heat shock |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus fermentum IFO 3956 |
| Orthologous TF(s) | LAF_0749 |
| Regulated genes | 2 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -87
Score: 5.7 Sequence: TTAGCACTTGAGGGGGTTGAGTGCTAG
Locus tag: LAF_0325
|
||||
| LAF_0325 | -87 | 5.7 | TTAGCACTTGAGGGGGTTGAGTGCTAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: groS | ||||
| Ortholog function: Heat shock protein 60 family co-chaperone GroES | ||||
| Lactobacillus acidophilus NCFM | LBA0405 | -159 | 7.6 | TTAGCACTTTTTTATAAAGAGTGCTAA |
| -84 | 6.8 | TTAGCACTTAACTAAAAGGAGTGCTAA | ||
| Lactobacillus brevis ATCC 367 | LVIS_0617 | -62 | 6.4 | TTAGCACTTATGTTAGTCAAGTGCTAA |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_1497 | -140 | 6.5 | TTAGCACTCTCGACTAAAAAGTGCTAT |
| -65 | 6.7 | TTAGCACTTGATCAAGATGAGTGCTAA | ||
| Lactobacillus fermentum IFO 3956 | LAF_0325 | -87 | 5.7 | TTAGCACTTGAGGGGGTTGAGTGCTAG |
| Lactobacillus helveticus DPC 4571 | lhv_0425 | -159 | 6.9 | TTAGCACTATTTGTAAAAAAGTGCTAA |
| -85 | 7.1 | TTAGCACTTAAGAAATAAGAGTGCTAA | ||
| Lactobacillus plantarum WCFS1 | lp_0727 | -51 | 6.4 | TTAGCACTTGAGGTTGAGGAGTGCTAA |
| Lactobacillus reuteri JCM 1112 | LAR_0342 | -61 | 6.5 | TTAGCACTTGAAGAGTTTGAGTGCTAA |
| Lactobacillus sakei subsp. sakei 23K | LSA0358 | -55 | 6.8 | TTAGCACTTGAGTGTTTAGAGTGCTAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1212 | -135 | 6.4 | TTAGCACTCTAATGTGTCGAGTGATAA |
| -61 | 7 | TTAGCACTCAAGAGTTGAGAGTGCTAA | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1763 | -54 | 7.5 | TTAGCACTCACGTTTAAAGAGTGCTAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0420 | -65 | 6.3 | TTAGCACTTAGAGATGACGAGTGCTAA |
|
Position: -44
Score: 5.5 Sequence: TTAGCAAACAGTACTAACTAGTGCTAA
Locus tag: LAF_0360
|
||||
| LAF_0360 | -44 | 5.5 | TTAGCAAACAGTACTAACTAGTGCTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: clpP | ||||
| Ortholog function: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) | ||||
| Lactobacillus acidophilus NCFM | LBA0694 | -59 | 6.1 | TTAGCACAGTACTTGTATGAGTGCTAA |
| Lactobacillus casei ATCC 334 | LSEI_0963 | -51 | 6.9 | TTAGCACTGTACTTTTAAGAGTGCTAA |
| Lactobacillus fermentum IFO 3956 | LAF_0360 | -44 | 5.5 | TTAGCAAACAGTACTAACTAGTGCTAA |
| Lactobacillus helveticus DPC 4571 | lhv_0735 | -60 | 6.6 | TTAGCACAGTACTTAAAAGAGTGCTAA |
| Lactobacillus johnsonii NCC 533 | LJ0869 | -49 | 6.9 | TTAGCACTGTACTTATTAGAGTGCTAA |
| Lactobacillus reuteri JCM 1112 | LAR_0379 | -47 | 5.8 | TTAGCATATAAGACTAACGAGTGCTAA |
| Lactobacillus rhamnosus GG | LGG_00931 | -54 | 7 | TTAGCACTGTACTTTAAAGAGTGCTAA |