Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of HrcA regulog to Lactobacillus fermentum IFO 3956

Reference regulog properties
Source regulog: HrcA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: HrcA
Regulation mode: repressor
Biological process: Heat shock response
Effector: Heat shock
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus fermentum IFO 3956
Orthologous TF(s) LAF_0749
Regulated genes 2
Built upon 69 sites [see more]
Predicted regulatory interactions in Lactobacillus fermentum IFO 3956
Locus tag Position Score Sequence
Position: -87
Score: 5.7
Sequence: TTAGCACTTGAGGGGGTTGAGTGCTAG
Locus tag: LAF_0325
LAF_0325 -87 5.7 TTAGCACTTGAGGGGGTTGAGTGCTAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: groS
Ortholog function: Heat shock protein 60 family co-chaperone GroES
Lactobacillus acidophilus NCFM LBA0405 -159 7.6 TTAGCACTTTTTTATAAAGAGTGCTAA
-84 6.8 TTAGCACTTAACTAAAAGGAGTGCTAA
Lactobacillus brevis ATCC 367 LVIS_0617 -62 6.4 TTAGCACTTATGTTAGTCAAGTGCTAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1497 -140 6.5 TTAGCACTCTCGACTAAAAAGTGCTAT
-65 6.7 TTAGCACTTGATCAAGATGAGTGCTAA
Lactobacillus fermentum IFO 3956 LAF_0325 -87 5.7 TTAGCACTTGAGGGGGTTGAGTGCTAG
Lactobacillus helveticus DPC 4571 lhv_0425 -159 6.9 TTAGCACTATTTGTAAAAAAGTGCTAA
-85 7.1 TTAGCACTTAAGAAATAAGAGTGCTAA
Lactobacillus plantarum WCFS1 lp_0727 -51 6.4 TTAGCACTTGAGGTTGAGGAGTGCTAA
Lactobacillus reuteri JCM 1112 LAR_0342 -61 6.5 TTAGCACTTGAAGAGTTTGAGTGCTAA
Lactobacillus sakei subsp. sakei 23K LSA0358 -55 6.8 TTAGCACTTGAGTGTTTAGAGTGCTAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1212 -135 6.4 TTAGCACTCTAATGTGTCGAGTGATAA
-61 7 TTAGCACTCAAGAGTTGAGAGTGCTAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1763 -54 7.5 TTAGCACTCACGTTTAAAGAGTGCTAA
Pediococcus pentosaceus ATCC 25745 PEPE_0420 -65 6.3 TTAGCACTTAGAGATGACGAGTGCTAA
Position: -44
Score: 5.5
Sequence: TTAGCAAACAGTACTAACTAGTGCTAA
Locus tag: LAF_0360
LAF_0360 -44 5.5 TTAGCAAACAGTACTAACTAGTGCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpP
Ortholog function: ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)
Lactobacillus acidophilus NCFM LBA0694 -59 6.1 TTAGCACAGTACTTGTATGAGTGCTAA
Lactobacillus casei ATCC 334 LSEI_0963 -51 6.9 TTAGCACTGTACTTTTAAGAGTGCTAA
Lactobacillus fermentum IFO 3956 LAF_0360 -44 5.5 TTAGCAAACAGTACTAACTAGTGCTAA
Lactobacillus helveticus DPC 4571 lhv_0735 -60 6.6 TTAGCACAGTACTTAAAAGAGTGCTAA
Lactobacillus johnsonii NCC 533 LJ0869 -49 6.9 TTAGCACTGTACTTATTAGAGTGCTAA
Lactobacillus reuteri JCM 1112 LAR_0379 -47 5.8 TTAGCATATAAGACTAACGAGTGCTAA
Lactobacillus rhamnosus GG LGG_00931 -54 7 TTAGCACTGTACTTTAAAGAGTGCTAA
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