Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RbsR regulog to Oenococcus oeni PSU-1

Reference regulog properties
Source regulog: RbsR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Ribose utilization
Effector: Ribose
Phylum: Firmicutes
Propagated regulon:
Target genome Oenococcus oeni PSU-1
Orthologous TF(s) OEOE_0146
Regulated genes 2
Built upon 18 sites [see more]
Predicted regulatory interactions in Oenococcus oeni PSU-1
Locus tag Position Score Sequence
Position: -47
Score: 5.1
Sequence: TGTTGTAAACGTTTTAAGAA
Locus tag: OEOE_0146
OEOE_0146 -47 5.1 TGTTGTAAACGTTTTAAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsR
Ortholog function: Transcriptional repressor of ribose utilization, LacI family
Lactobacillus casei ATCC 334 LSEI_0306 -45 6.7 TAAGTAAAACGTTTTACCTA
Lactobacillus fermentum IFO 3956 LAF_1343 -44 6 TTAGTAAACTGTTTTATTAA
Lactobacillus reuteri JCM 1112 LAR_1219 -35 4.7 TAGATAAAACTGTTTACTAA
Lactobacillus rhamnosus GG LGG_00372 -46 6.7 TAAGTAAAACGTTTTACCTA
Lactobacillus sakei subsp. sakei 23K LSA0203 -49 6.9 TTAGTAAAACGTTTTACTAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0795 -123 6.6 TTAGTAAAACGTTTAACCAA
Oenococcus oeni PSU-1 OEOE_0146 -47 5.1 TGTTGTAAACGTTTTAAGAA
Position: 25
Score: 6.4
Sequence: TTAGTAAAGCGTTTTACTTA
Locus tag: OEOE_1612
OEOE_1612 25 6.4 TTAGTAAAGCGTTTTACTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsK
Ortholog function: Ribokinase (EC 2.7.1.15)
Lactobacillus brevis ATCC 367 LVIS_1421 -50 6.5 TACGTAAAACGTTTTACAAA
Lactobacillus reuteri JCM 1112 LAR_1218 -35 4.7 TAGATAAAACTGTTTACTAA
Oenococcus oeni PSU-1 OEOE_1612 25 6.4 TTAGTAAAGCGTTTTACTTA
© 2009-2020 RegPrecise