Regulog RbsR - Lactobacillaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Ribose utilization
Effector:	Ribose
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 18 sites [see more]

Member of regulog collections

By taxonomy - Lactobacillaceae
By TF family - LacI
By effector - Ribose
By pathway - Ribose utilization

Statistics of regulated genes
Genome	Genes	Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367	3	3
Lactobacillus casei ATCC 334	5	1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956	5	3
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1	3	1
Lactobacillus reuteri JCM 1112	2	1
Lactobacillus rhamnosus GG	2	1
Lactobacillus sakei subsp. sakei 23K	4	1
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	2	2
Oenococcus oeni PSU-1	4	2
Pediococcus pentosaceus ATCC 25745	3	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
rbsR	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367 Gene: LVIS_1422: Transcriptional repressor of ribose utilization, LacI family	* Lactobacillus casei ATCC 334 Site: position = -45 score = 6.73597 sequence = TAAGTAAAACGTTTTACCTA Gene: LSEI_0306: Transcriptional repressor of ribose utilization, LacI family	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	* Lactobacillus fermentum IFO 3956 Site: position = -44 score = 5.98689 sequence = TTAGTAAACTGTTTTATTAA Gene: LAF_1343: Transcriptional repressor of ribose utilization, LacI family	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_3661: Transcriptional repressor of ribose utilization, LacI family	* Lactobacillus reuteri JCM 1112 Site: position = -35 score = 4.66901 sequence = TAGATAAAACTGTTTACTAA Gene: LAR_1219: Transcriptional repressor of ribose utilization, LacI family	* Lactobacillus rhamnosus GG Site: position = -46 score = 6.73597 sequence = TAAGTAAAACGTTTTACCTA Gene: LGG_00372: Transcriptional repressor of ribose utilization, LacI family	Lactobacillus sakei subsp. sakei 23K Gene: LSA0203: Transcriptional repressor of ribose utilization, LacI family	Lactobacillus salivarius subsp. salivarius UCC118	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -123 score = 6.56921 sequence = TTAGTAAAACGTTTAACCAA Gene: LEUM_0795: Transcriptional repressor of ribose utilization, LacI family	* Oenococcus oeni PSU-1 Site: position = -47 score = 5.11961 sequence = TGTTGTAAACGTTTTAAGAA Gene: OEOE_0146: Transcriptional repressor of ribose utilization, LacI family	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1700: Transcriptional repressor of ribose utilization, LacI family	Transcriptional repressor of ribose utilization, LacI family
rbsD	Lactobacillus acidophilus NCFM Gene: LBA1484: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	* Lactobacillus brevis ATCC 367 Site: position = -125 score = 5.03979 sequence = TAAGTAAATCGATTTACGCA Gene: LVIS_1589: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Lactobacillus casei ATCC 334 Gene: LSEI_0307: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956 Gene: LAF_1737: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533 Gene: LJ1214: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Lactobacillus plantarum WCFS1 Gene: lp_3659: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Lactobacillus reuteri JCM 1112 Gene: LAR_0400: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K Gene: LSA0201: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1 Gene: OEOE_1613: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1698: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)	D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
rbsA	Lactobacillus acidophilus NCFM Gene: LBA1483: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334 Gene: LSEI_0308: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
rbsC	Lactobacillus acidophilus NCFM Gene: LBA1482: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334 Gene: LSEI_0309: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
rbsB	Lactobacillus acidophilus NCFM Gene: LBA1481: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334 Gene: LSEI_0310: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
rbsU	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533 Gene: LJ1213: Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5)	Lactobacillus plantarum WCFS1 Gene: lp_3658: Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5)	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	* Lactobacillus sakei subsp. sakei 23K Site: position = -49 score = 6.91678 sequence = TTAGTAAAACGTTTTACTAA Gene: LSA0200: Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5)	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1697: Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5)	Putative ribose uptake protein RbsU, GRP transporter family (TC 2.A.7.5)
rbsK	2 Lactobacillus acidophilus NCFM Gene: LBA0587: Ribokinase (EC 2.7.1.15) Gene: LBA1485: Ribokinase (EC 2.7.1.15)	* Lactobacillus brevis ATCC 367 Site: position = -50 score = 6.46515 sequence = TACGTAAAACGTTTTACAAA Gene: LVIS_1421: Ribokinase (EC 2.7.1.15)	Lactobacillus casei ATCC 334 Gene: LSEI_0312: Ribokinase (EC 2.7.1.15)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_0470: Ribokinase (EC 2.7.1.15)	2 Lactobacillus fermentum IFO 3956* Site: position = -47 score = 5.00107 sequence = AACGTAAAACGATTTACTGA Gene: LAF_1689: Ribokinase (EC 2.7.1.15) Site: position = -59 score = 6.22954 sequence = TACGTAAAAGGTTTTAACAA Gene: LAF_1738: Ribokinase (EC 2.7.1.15)	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533 Gene: LJ0797: Ribokinase (EC 2.7.1.15)	* Lactobacillus plantarum WCFS1 Site: position = -74 score = 6.22293 sequence = TTATTAAAACGTTTTCATAA Site: position = -61 score = 6.05536 sequence = TTCATAAAACGTTTTAATAA Gene: lp_3660: Ribokinase (EC 2.7.1.15)	2 Lactobacillus reuteri JCM 1112 Gene: LAR_1218: Ribokinase (EC 2.7.1.15) Gene: LAR_0399: Ribokinase (EC 2.7.1.15)	Lactobacillus rhamnosus GG Gene: LGG_00373: Ribokinase (EC 2.7.1.15)	Lactobacillus sakei subsp. sakei 23K Gene: LSA0202: Ribokinase (EC 2.7.1.15)	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_0423: Ribokinase (EC 2.7.1.15)	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -46 score = 6.56921 sequence = TTAGTAAAACGTTTAACCAA Gene: LEUM_0794: Ribokinase (EC 2.7.1.15)	* Oenococcus oeni PSU-1 Site: position = 25 score = 6.44693 sequence = TTAGTAAAGCGTTTTACTTA Gene: OEOE_1612: Ribokinase (EC 2.7.1.15)	* Pediococcus pentosaceus ATCC 25745 Site: position = -67 score = 5.64475 sequence = CTATTAAAACGTTTTCATAA Site: position = -54 score = 5.33283 sequence = TTCATAAAACGTTTTAAACA Gene: PEPE_1699: Ribokinase (EC 2.7.1.15)	Ribokinase (EC 2.7.1.15)
rbsP	Lactobacillus acidophilus NCFM	* Lactobacillus brevis ATCC 367 Site: position = -48 score = 5.21207 sequence = GATGTAAAACGTTTTACGAT Gene: LVIS_1588: Predicted ribose permease	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956 Gene: LAF_1736: Predicted ribose permease	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_0498: Predicted ribose permease	Lactobacillus reuteri JCM 1112 Gene: LAR_0401: Predicted ribose permease	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1 Gene: OEOE_1614: Predicted ribose permease	Pediococcus pentosaceus ATCC 25745	Predicted ribose permease

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RbsR - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --