Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of XylR regulog to Lactobacillus brevis ATCC 367

Reference regulog properties
Source regulog: XylR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: ROK
Regulation mode: repressor
Biological process: Xylose utilization
Effector: Xylose
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus brevis ATCC 367
Orthologous TF(s) LVIS_2045, LVIS_0464, LVIS_2109
Regulated genes 5
Built upon 15 sites [see more]
Predicted regulatory interactions in Lactobacillus brevis ATCC 367
Locus tag Position Score Sequence
Position: -46
Score: 5
Sequence: GTAAGTTGGTTGTCGCAACGAAC
Position: -42
Score: 5.7
Sequence: GTTGGTTGTCGCAACGAACTAAC
Locus tag: LVIS_0183
LVIS_0183 -46 5 GTAAGTTGGTTGTCGCAACGAAC
-42 5.7 GTTGGTTGTCGCAACGAACTAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Lactobacillus brevis ATCC 367 LVIS_0183 -42 5.7 GTTGGTTGTCGCAACGAACTAAC
Lactobacillus fermentum IFO 3956 LAF_0402 -53 5.1 GTTAGTTGTTTTAAAAAACCAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0130 -59 5.8 GTTGGTTGGTGTAACCAACTATG
Pediococcus pentosaceus ATCC 25745 PEPE_0187 -66 5.1 GTTTGTAAATAGAACTAACAAAC
Position: -150
Score: 5.3
Sequence: GTTGGTTTAGTAAACCAATTTAC
Locus tag: LVIS_0462
LVIS_0462 -150 5.3 GTTGGTTTAGTAAACCAATTTAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylS
Ortholog function: Alpha-xylosidase (EC 3.2.1.-)
Lactobacillus brevis ATCC 367 LVIS_0462 -150 5.3 GTTGGTTTAGTAAACCAATTTAC
Pediococcus pentosaceus ATCC 25745 PEPE_0184 -182 5.1 GTTTGTTAGTTCTATTTACAAAC
Position: -151
Score: 5.3
Sequence: GTAAATTGGTTTACTAAACCAAC
Locus tag: LVIS_0463
LVIS_0463 -151 5.3 GTAAATTGGTTTACTAAACCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: xynT
Ortholog function: Xyloside transporter XynT
Lactobacillus brevis ATCC 367 LVIS_0463 -151 5.3 GTAAATTGGTTTACTAAACCAAC
Pediococcus pentosaceus ATCC 25745 PEPE_0185 -66 5.1 GTTTGTAAATAGAACTAACAAAC
Position: -154
Score: 5.4
Sequence: GTTGGTTGGTTCACTGAACCATG
Locus tag: LVIS_2109
LVIS_2109 -154 5.4 GTTGGTTGGTTCACTGAACCATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylR
Ortholog function: Xylose repressor XylR, ROK family
Lactobacillus brevis ATCC 367 LVIS_0464 -151 5.3 GTAAATTGGTTTACTAAACCAAC
Lactobacillus brevis ATCC 367 LVIS_2109 -154 5.4 GTTGGTTGGTTCACTGAACCATG
Pediococcus pentosaceus ATCC 25745 PEPE_0186 -66 5.1 GTTTGTAAATAGAACTAACAAAC
Position: -90
Score: 5.1
Sequence: GTTGGTTGCTTTCGACAACTAAT
Locus tag: LVIS_2287
LVIS_2287 -90 5.1 GTTGGTTGCTTTCGACAACTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: LVIS_2287
Ortholog function: AraC-type DNA-binding protein
Lactobacillus brevis ATCC 367 LVIS_2287 -90 5.1 GTTGGTTGCTTTCGACAACTAAT
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