Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LexA regulog to Lactobacillus fermentum IFO 3956

Reference regulog properties
Source regulog: LexA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus fermentum IFO 3956
Orthologous TF(s) LAF_0708
Regulated genes 6
Built upon 99 sites [see more]
Predicted regulatory interactions in Lactobacillus fermentum IFO 3956
Locus tag Position Score Sequence
Position: -75
Score: 4.1
Sequence: GCGAACATTCATTCCC
Locus tag: LAF_0036
LAF_0036 -75 4.1 GCGAACATTCATTCCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: addB
Ortholog function: ATP-dependent nuclease, subunit B
Lactobacillus acidophilus NCFM LBA1166 -8 4.1 GCGAACAAATGATCAA
Lactobacillus brevis ATCC 367 LVIS_2268 -202 4.4 TTGAACGTGTGTTCGT
Lactobacillus fermentum IFO 3956 LAF_0036 -75 4.1 GCGAACATTCATTCCC
Lactobacillus helveticus DPC 4571 lhv_1274 -8 4.1 GCGAACAAATGATCAA
Lactobacillus plantarum WCFS1 lp_2694 -32 4.3 GAGAACGTTTGTTCAG
Lactobacillus reuteri JCM 1112 LAR_0047 -67 4.8 AAGAATATATGTTCGT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1482 -62 4.3 ACGAACAATCGTGCGC
Position: -99
Score: 4.7
Sequence: ACGAATAAACGTTCGT
Locus tag: LAF_0353
LAF_0353 -99 4.7 ACGAATAAACGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrB
Ortholog function: Excinuclease ABC, subunit B
Lactobacillus acidophilus NCFM LBA0688 -87 4.6 GCGAAAACACGTTCGT
Lactobacillus brevis ATCC 367 LVIS_0648 -101 4.9 GCGAAAGTATGTTCGG
Lactobacillus casei ATCC 334 LSEI_0956 -206 5 GCGAAAGTATGTTCGC
-127 4.2 ACGAAATTTTGTTTGG
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0549 -64 4.1 TAGAATCTATGTTCGG
Lactobacillus fermentum IFO 3956 LAF_0353 -99 4.7 ACGAATAAACGTTCGT
Lactobacillus helveticus DPC 4571 lhv_0729 -86 4.6 GCGAAAACACGTTCGT
Lactobacillus johnsonii NCC 533 LJ0863 -86 5 GCGAAAATACGTTCGC
Lactobacillus plantarum WCFS1 lp_0772 -146 5 GCGAAAGTATGTTCGA
Lactobacillus reuteri JCM 1112 LAR_0372 -132 4.4 ACGAATACATGTTTGG
Lactobacillus rhamnosus GG LGG_00923 -271 5 GCGAAAGTATGTTCGC
Lactobacillus sakei subsp. sakei 23K LSA0523 -190 4.9 GCGAAAATACGTTCGG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0392 -89 4.9 TAGAACGTTTGTTCGT
Oenococcus oeni PSU-1 OEOE_0372 -50 4.2 GGGAACTAATGTTCGC
Pediococcus pentosaceus ATCC 25745 PEPE_0448 -127 4.9 GCGAAAGTATGTTCGG
Position: -89
Score: 3.9
Sequence: CCGAACCCCTGTTCGA
Locus tag: LAF_0511
LAF_0511 -89 3.9 CCGAACCCCTGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: DNA recombinase A
Lactobacillus acidophilus NCFM LBA0666 -82 4.2 TTGAACATTAGTTTGT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0535 -84 4.1 TTGAACGTTAGTTCGG
Lactobacillus fermentum IFO 3956 LAF_0511 -89 3.9 CCGAACCCCTGTTCGA
Lactobacillus helveticus DPC 4571 lhv_0713 -82 4.1 TTGAACGTTAGTTTGT
Lactobacillus plantarum WCFS1 lp_2301 -90 4.8 ACGAACTTTTGTTCGC
Lactobacillus reuteri JCM 1112 LAR_0509 -89 4.3 ACGAACTTTTGTTCAC
Lactobacillus sakei subsp. sakei 23K LSA0487 -94 4.9 AAGAACGTTTGTTCGA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0584 -82 5.2 ACGAACAAATGTTCGA
Oenococcus oeni PSU-1 OEOE_1382 -57 5.2 ACGAACAAATGTTCGT
Pediococcus pentosaceus ATCC 25745 PEPE_1276 -84 4.8 TCGAACTTTTGTTCGC
Position: -29
Score: 3.8
Sequence: TCAAACACCTGTTTAA
Locus tag: LAF_0625
LAF_0625 -29 3.8 TCAAACACCTGTTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrC
Ortholog function: Nuclease subunit of the excinuclease complex
Lactobacillus brevis ATCC 367 LVIS_1383 -64 4.4 CCAAACAAACATTCGG
Lactobacillus casei ATCC 334 LSEI_1346 -29 4.9 GCGAACATTTGTTTTA
Lactobacillus rhamnosus GG LGG_01358 -29 4.9 GCGAACATTTGTTTTA
Lactobacillus sakei subsp. sakei 23K LSA1055 -35 4.4 ACGAACACTTGTTTTG
Pediococcus pentosaceus ATCC 25745 PEPE_1135 16 3.9 TTGAACATAAGTTGGC
Position: -79
Score: 4.9
Sequence: TCGAACGTACGTTTTA
Locus tag: LAF_0708
LAF_0708 -79 4.9 TCGAACGTACGTTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
Lactobacillus acidophilus NCFM LBA1280 -80 4.1 AAGAACGCCTGTTTGA
Lactobacillus casei ATCC 334 LSEI_1968 -53 4.1 TCAAAAGTTTTTTTGT
Lactobacillus casei ATCC 334 LSEI_0730 -61 5 GCAAACGTTCGTTCGC
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1265 -85 4.1 TAGAACGCCCGTTTGC
Lactobacillus fermentum IFO 3956 LAF_0708 -79 4.9 TCGAACGTACGTTTTA
Lactobacillus helveticus DPC 4571 lhv_1364 -82 4.8 TAGAACATTCGTTTGA
Lactobacillus johnsonii NCC 533 LJ1508 -71 4.1 AAGAACGCCTGTTTGC
Lactobacillus plantarum WCFS1 lp_2063 -81 5 CCGAACATTTGTTTGA
Lactobacillus reuteri JCM 1112 LAR_0650 -71 5.2 GCGAACGTACGTTTGA
Lactobacillus rhamnosus GG LGG_00717 -60 4.7 GCAAACGTCCGTTCGT
Lactobacillus sakei subsp. sakei 23K LSA1275 -70 4.7 ACGAACACTTGTTTGA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0540 -74 4.6 ACGAACGTTAGTTTGA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1204 -75 5 ACGAACAAACGTTTGA
Oenococcus oeni PSU-1 OEOE_0970 -76 4.9 ACGAACATGTGTTTGT
Pediococcus pentosaceus ATCC 25745 PEPE_0870 -68 5.1 GCGAACATTTGTTTGA
Position: -67
Score: 3.9
Sequence: CCGAACACTTGTTCCG
Locus tag: LAF_1605
LAF_1605 -67 3.9 CCGAACACTTGTTCCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: umuC
Ortholog function: UV-damage repair protein
Lactobacillus fermentum IFO 3956 LAF_1605 -67 3.9 CCGAACACTTGTTCCG
Lactobacillus plantarum WCFS1 lp_3023 -192 4.9 AAGAACATATGTTCTT
Lactobacillus reuteri JCM 1112 LAR_1238 -59 4.8 TTGAACATATGTTTGA
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