Regulog RpiR - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | RpiR |
| Regulation mode: | repressor |
| Biological process: | Sugar utilization |
| Effector: | |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By TF family - RpiR
- By pathway - Sugar utilization
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | 4 | 2 |
| Lactobacillus brevis ATCC 367 | ||
| Lactobacillus casei ATCC 334 | 3 | 2 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus helveticus DPC 4571 | 1 | 1 |
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | ||
| Lactobacillus reuteri JCM 1112 | ||
| Lactobacillus rhamnosus GG | ||
| Lactobacillus sakei subsp. sakei 23K | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | 3 | 2 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | ||
| Oenococcus oeni PSU-1 | ||
| Pediococcus pentosaceus ATCC 25745 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| rpiA |
*2
Lactobacillus acidophilus NCFM Site: position = -196 score = 5.85195 sequence = TGAAATTAATTTTCA Gene: LBA1174: Ribose 5-phosphate isomerase (EC 5.3.1.6) Gene: LBA0588: Ribose 5-phosphate isomerase (EC 5.3.1.6) |
Gene: LVIS_0574: Ribose 5-phosphate isomerase (EC 5.3.1.6) |
*2
Lactobacillus casei ATCC 334 Site: position = -44 score = 5.66643 sequence = TGAAATATAATTTCA Gene: LSEI_2315: Ribose 5-phosphate isomerase (EC 5.3.1.6) Gene: LSEI_2675: Ribose 5-phosphate isomerase (EC 5.3.1.6) |
Gene: LBUL_0472: Ribose 5-phosphate isomerase (EC 5.3.1.6) |
2
Lactobacillus fermentum IFO 3956 Gene: LAF_0254: Ribose 5-phosphate isomerase (EC 5.3.1.6) Gene: LAF_1725: Ribose 5-phosphate isomerase (EC 5.3.1.6) |
Gene: lhv_0612: Ribose 5-phosphate isomerase (EC 5.3.1.6) |
Gene: LJ0798: Ribose 5-phosphate isomerase (EC 5.3.1.6) |
2
Lactobacillus plantarum WCFS1 Gene: lp_0354: Ribose 5-phosphate isomerase (EC 5.3.1.6) Gene: lp_0602: Ribose 5-phosphate isomerase (EC 5.3.1.6) |
Gene: LAR_0286: Ribose 5-phosphate isomerase (EC 5.3.1.6) |
Gene: LGG_02699: Ribose 5-phosphate isomerase (EC 5.3.1.6) |
Gene: LSA1685: Ribose 5-phosphate isomerase (EC 5.3.1.6) |
*2
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -42 score = 5.56377 sequence = TGAAAATTAATTTCT Gene: LSL_1439: Ribose 5-phosphate isomerase (EC 5.3.1.6) Gene: LSL_1806: Ribose 5-phosphate isomerase (EC 5.3.1.6) |
2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0793: Ribose 5-phosphate isomerase (EC 5.3.1.6) Gene: LEUM_0154: Ribose 5-phosphate isomerase (EC 5.3.1.6) |
2
Oenococcus oeni PSU-1 Gene: OEOE_0159: Ribose 5-phosphate isomerase (EC 5.3.1.6) Gene: OEOE_1611: Ribose 5-phosphate isomerase (EC 5.3.1.6) |
Gene: PEPE_1506: Ribose 5-phosphate isomerase (EC 5.3.1.6) |
Ribose 5-phosphate isomerase (EC 5.3.1.6) |
| COG0673 |
2
Lactobacillus acidophilus NCFM Gene: LBA1175: oxidoreductase, Gfo/Idh/MocA family Gene: LBA1176: oxidoreductase, Gfo/Idh/MocA family |
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Gene: LSEI_2314: oxidoreductase, Gfo/Idh/MocA family |
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Gene: lhv_1523: oxidoreductase, Gfo/Idh/MocA family |
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Gene: lp_1136: oxidoreductase, Gfo/Idh/MocA family |
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Gene: LSL_1440: oxidoreductase, Gfo/Idh/MocA family |
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oxidoreductase, Gfo/Idh/MocA family |
| CRON 2. | ||||||||||||||||
| rpiR |
*
Lactobacillus acidophilus NCFM Site: position = -107 score = 5.85195 sequence = TGAAAATTAATTTCA Gene: LBA1172: Predicted sugar utilization transcriptional regulator, RpiR family |
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*
Lactobacillus casei ATCC 334 Site: position = -154 score = 5.66643 sequence = TGAAATTATATTTCA Gene: LSEI_2316: Predicted sugar utilization transcriptional regulator, RpiR family |
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*
Lactobacillus helveticus DPC 4571 Site: position = -118 score = 5.12106 sequence = TGAAAATAAGTTACA Gene: lhv_1519: Predicted sugar utilization transcriptional regulator, RpiR family |
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*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -104 score = 5.56377 sequence = AGAAATTAATTTTCA Gene: LSL_1438: Predicted sugar utilization transcriptional regulator, RpiR family |
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Predicted sugar utilization transcriptional regulator, RpiR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |