Regulog RpiR - Lactobacillaceae

Properties
Regulator type:	Transcription factor
Regulator family:	RpiR
Regulation mode:	repressor
Biological process:	Sugar utilization
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 7 sites [see more]

Member of regulog collections

By taxonomy - Lactobacillaceae
By TF family - RpiR
By pathway - Sugar utilization

Statistics of regulated genes
Genome	Genes	Operons
Lactobacillus acidophilus NCFM	4	2
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334	3	2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571	1	1
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG
Lactobacillus sakei subsp. sakei 23K
Lactobacillus salivarius subsp. salivarius UCC118	3	2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
rpiA	2 Lactobacillus acidophilus NCFM* Site: position = -196 score = 5.85195 sequence = TGAAATTAATTTTCA Gene: LBA1174: Ribose 5-phosphate isomerase (EC 5.3.1.6) Gene: LBA0588: Ribose 5-phosphate isomerase (EC 5.3.1.6)	Lactobacillus brevis ATCC 367 Gene: LVIS_0574: Ribose 5-phosphate isomerase (EC 5.3.1.6)	2 Lactobacillus casei ATCC 334* Site: position = -44 score = 5.66643 sequence = TGAAATATAATTTCA Gene: LSEI_2315: Ribose 5-phosphate isomerase (EC 5.3.1.6) Gene: LSEI_2675: Ribose 5-phosphate isomerase (EC 5.3.1.6)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_0472: Ribose 5-phosphate isomerase (EC 5.3.1.6)	2 Lactobacillus fermentum IFO 3956 Gene: LAF_0254: Ribose 5-phosphate isomerase (EC 5.3.1.6) Gene: LAF_1725: Ribose 5-phosphate isomerase (EC 5.3.1.6)	Lactobacillus helveticus DPC 4571 Gene: lhv_0612: Ribose 5-phosphate isomerase (EC 5.3.1.6)	Lactobacillus johnsonii NCC 533 Gene: LJ0798: Ribose 5-phosphate isomerase (EC 5.3.1.6)	2 Lactobacillus plantarum WCFS1 Gene: lp_0354: Ribose 5-phosphate isomerase (EC 5.3.1.6) Gene: lp_0602: Ribose 5-phosphate isomerase (EC 5.3.1.6)	Lactobacillus reuteri JCM 1112 Gene: LAR_0286: Ribose 5-phosphate isomerase (EC 5.3.1.6)	Lactobacillus rhamnosus GG Gene: LGG_02699: Ribose 5-phosphate isomerase (EC 5.3.1.6)	Lactobacillus sakei subsp. sakei 23K Gene: LSA1685: Ribose 5-phosphate isomerase (EC 5.3.1.6)	2 Lactobacillus salivarius subsp. salivarius UCC118* Site: position = -42 score = 5.56377 sequence = TGAAAATTAATTTCT Gene: LSL_1439: Ribose 5-phosphate isomerase (EC 5.3.1.6) Gene: LSL_1806: Ribose 5-phosphate isomerase (EC 5.3.1.6)	2 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0793: Ribose 5-phosphate isomerase (EC 5.3.1.6) Gene: LEUM_0154: Ribose 5-phosphate isomerase (EC 5.3.1.6)	2 Oenococcus oeni PSU-1 Gene: OEOE_0159: Ribose 5-phosphate isomerase (EC 5.3.1.6) Gene: OEOE_1611: Ribose 5-phosphate isomerase (EC 5.3.1.6)	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1506: Ribose 5-phosphate isomerase (EC 5.3.1.6)	Ribose 5-phosphate isomerase (EC 5.3.1.6)
COG0673	2 Lactobacillus acidophilus NCFM Gene: LBA1175: oxidoreductase, Gfo/Idh/MocA family Gene: LBA1176: oxidoreductase, Gfo/Idh/MocA family	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334 Gene: LSEI_2314: oxidoreductase, Gfo/Idh/MocA family	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571 Gene: lhv_1523: oxidoreductase, Gfo/Idh/MocA family	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_1136: oxidoreductase, Gfo/Idh/MocA family	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_1440: oxidoreductase, Gfo/Idh/MocA family	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	oxidoreductase, Gfo/Idh/MocA family

CRON 2.
rpiR	* Lactobacillus acidophilus NCFM Site: position = -107 score = 5.85195 sequence = TGAAAATTAATTTCA Gene: LBA1172: Predicted sugar utilization transcriptional regulator, RpiR family	Lactobacillus brevis ATCC 367	* Lactobacillus casei ATCC 334 Site: position = -154 score = 5.66643 sequence = TGAAATTATATTTCA Gene: LSEI_2316: Predicted sugar utilization transcriptional regulator, RpiR family	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	* Lactobacillus helveticus DPC 4571 Site: position = -118 score = 5.12106 sequence = TGAAAATAAGTTACA Gene: lhv_1519: Predicted sugar utilization transcriptional regulator, RpiR family	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K	* Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -104 score = 5.56377 sequence = AGAAATTAATTTTCA Gene: LSL_1438: Predicted sugar utilization transcriptional regulator, RpiR family	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Predicted sugar utilization transcriptional regulator, RpiR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RpiR - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --