Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of RpiR regulog to Lactobacillus casei BL23

Reference regulog properties
Source regulog: RpiR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: RpiR
Regulation mode: repressor
Biological process: Sugar utilization
Effector:
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus casei BL23
Orthologous TF(s) LCABL_24950
Regulated genes 2
Built upon 7 sites [see more]
Predicted regulatory interactions in Lactobacillus casei BL23
Locus tag Position Score Sequence
Position: -44
Score: 5.7
Sequence: TGAAATATAATTTCA
Locus tag: LCABL_24940
LCABL_24940 -44 5.7 TGAAATATAATTTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpiA
Ortholog function: Ribose 5-phosphate isomerase (EC 5.3.1.6)
Lactobacillus acidophilus NCFM LBA1174 -196 5.9 TGAAATTAATTTTCA
Lactobacillus casei ATCC 334 LSEI_2315 -44 5.7 TGAAATATAATTTCA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1439 -42 5.6 TGAAAATTAATTTCT
Position: -154
Score: 5.7
Sequence: TGAAATTATATTTCA
Locus tag: LCABL_24950
LCABL_24950 -154 5.7 TGAAATTATATTTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpiR
Ortholog function: Predicted sugar utilization transcriptional regulator, RpiR family
Lactobacillus acidophilus NCFM LBA1172 -107 5.9 TGAAAATTAATTTCA
Lactobacillus casei ATCC 334 LSEI_2316 -154 5.7 TGAAATTATATTTCA
Lactobacillus helveticus DPC 4571 lhv_1519 -118 5.1 TGAAAATAAGTTACA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1438 -104 5.6 AGAAATTAATTTTCA
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