Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of Zur regulog to Lactobacillus plantarum WCFS1

Reference regulog properties
Source regulog: Zur - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Zinc homeostasis
Effector: Zinc ion, (Zn2+)
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus plantarum WCFS1
Orthologous TF(s) lp_0868
Regulated genes 6
Built upon 43 sites [see more]
Predicted regulatory interactions in Lactobacillus plantarum WCFS1
Locus tag Position Score Sequence
Position: -51
Score: 6.9
Sequence: AAAATAGTAATCATTACGATTTA
Locus tag: lp_0463
lp_0463 -51 6.9 AAAATAGTAATCATTACGATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: znuC
Ortholog function: Zinc ABC transporter, ATP-binding protein
Lactobacillus brevis ATCC 367 LVIS_0471 -46 6.6 TAAACGGTAATCATTACTGTTTA
Lactobacillus casei ATCC 334 LSEI_0242 -39 6.4 TAAACCGTAATCGTTACCGTTTA
Lactobacillus fermentum IFO 3956 LAF_0192 -48 6.7 TTAATCGTAAGGATTACGATTTA
Lactobacillus plantarum WCFS1 lp_0463 -51 6.9 AAAATAGTAATCATTACGATTTA
Lactobacillus reuteri JCM 1112 LAR_0208 -36 6.8 TAAATAGTAACGATTACGATTAA
Lactobacillus rhamnosus GG LGG_00285 -39 6.4 TAAATCGTAATCGTTACCGTTTG
Lactobacillus sakei subsp. sakei 23K LSA0283 -37 6.5 TAAAGCGTAACTATTACGATTTA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1586 -40 7 TAAAAAGTAATGATTACTATATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0804 -171 6.2 TTTAAAGTAATCATTACTTTTTG
-142 6.2 TTAATAGTAATGATTACTATAAT
Oenococcus oeni PSU-1 OEOE_1187 -118 6 TAACAAGTAATCATTACTAAGTA
-76 5.5 GTAAAAGTAATATTTACCATTAA
Pediococcus pentosaceus ATCC 25745 PEPE_0290 -33 6.9 TAAATAGTAATTATTACTCTTTA
Position: -56
Score: 6.9
Sequence: TAAATAGTAATGATTATGATTTA
Locus tag: lp_0868
lp_0868 -56 6.9 TAAATAGTAATGATTATGATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: zur
Ortholog function: Zinc homeostasis transcriptional regulator Zur, Fur family
Lactobacillus casei ATCC 334 LSEI_2025 -69 6.5 TTAATCGTAATCAATACGATTTA
Lactobacillus fermentum IFO 3956 LAF_1665 -37 5.8 AAAAACGTAATCATTACTAAAAA
Lactobacillus plantarum WCFS1 lp_0868 -56 6.9 TAAATAGTAATGATTATGATTTA
Lactobacillus rhamnosus GG LGG_02012 -70 5.4 CTAATCGTAACCAGTACGATTTG
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1450 -35 6.6 TAGAAAGTAAAGATTACTATTTA
Oenococcus oeni PSU-1 OEOE_1189 -95 5.4 TTAATGGTAAATATTACTTTTAC
-53 6 TACTTAGTAATGATTACTTGTTA
Pediococcus pentosaceus ATCC 25745 PEPE_0386 -36 7.3 TAAAACGTAATGATTACTATTTA
Position: -36
Score: 6.7
Sequence: TAAATGGTAATAATTACTATTTA
Locus tag: lp_0947
lp_0947 -36 6.7 TAAATGGTAATAATTACTATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lp_0947
Ortholog function: Conserved hypothetical protein
Lactobacillus casei ATCC 334 LSEI_2426 -183 6.4 CAAAACGTAATAATTACGATTTA
-40 6.9 TAAATAGTAATGATTACGAATTA
Lactobacillus plantarum WCFS1 lp_0947 -36 6.7 TAAATGGTAATAATTACTATTTA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1943 -63 5.7 TAAATCGTAATTGATATCATTTA
-42 7.3 TAAAAAGTAATGATTACTATTTA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0082 -65 6.1 TAAATAGTAATAATTACTATAAT
-43 6.7 TTAAAAGTAATTGTTACTATTTA
Oenococcus oeni PSU-1 OEOE_0084 -42 6.6 TAAATAGTAATAATTACTTTTAA
Position: -125
Score: 5.6
Sequence: AAAATAGTAGCTGTTACGATTTA
Locus tag: lp_2216
lp_2216 -125 5.6 AAAATAGTAGCTGTTACGATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rpsN2
Ortholog function: Small subunit ribosomal protein S14, zinc-independent
Lactobacillus brevis ATCC 367 LVIS_0360 -37 5.9 TAAAGCGTAATAATTACTATCAA
Lactobacillus casei ATCC 334 LSEI_2425 -248 6.9 TAAATAGTAATGATTACGAATTA
Lactobacillus fermentum IFO 3956 LAF_1127 -82 6.5 TAAATGGTAATAATTACTATTTG
Lactobacillus plantarum WCFS1 lp_2216 -125 5.6 AAAATAGTAGCTGTTACGATTTA
Lactobacillus rhamnosus GG LGG_02422 -243 6.8 TTAAGCGTAATGATTACGATTTA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1944 -63 5.7 TAAATCGTAATTGATATCATTTA
-42 7.3 TAAAAAGTAATGATTACTATTTA
Position: -88
Score: 6.8
Sequence: TAAAACGTAAATATTACTATTTA
Position: -39
Score: 7.3
Sequence: TAAAACGTAATGATTACTATTTA
Locus tag: lp_3018
lp_3018 -88 6.8 TAAAACGTAAATATTACTATTTA
-39 7.3 TAAAACGTAATGATTACTATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: znuA
Ortholog function: Zinc ABC transporter, substrate-binding protein
Lactobacillus brevis ATCC 367 LVIS_0566 -41 6.8 TAAATAGTAATAATTACCATTTA
Lactobacillus plantarum WCFS1 lp_3018 -88 6.8 TAAAACGTAAATATTACTATTTA
-39 7.3 TAAAACGTAATGATTACTATTTA
Position: -44
Score: 6.6
Sequence: TTAACAGTAATGGTTACGATTTA
Locus tag: lp_3302
lp_3302 -44 6.6 TTAACAGTAATGGTTACGATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: znuA
Ortholog function: Zinc ABC transporter, substrate-binding protein
Lactobacillus brevis ATCC 367 LVIS_0470 -46 6.6 TAAACGGTAATCATTACTGTTTA
Lactobacillus plantarum WCFS1 lp_3302 -44 6.6 TTAACAGTAATGGTTACGATTTA
Lactobacillus sakei subsp. sakei 23K LSA0282 -37 6.5 TAAAGCGTAACTATTACGATTTA
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