Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PerR regulog to Lactobacillus casei BL23

Reference regulog properties
Source regulog: PerR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Manganese homeostasis; Oxidative stress response; Iron homeostasis
Effector: Iron ion, (Fe2+); Manganese ion, (Mn2+); Hydrogen peroxide
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus casei BL23
Orthologous TF(s) LCABL_21920, LCABL_09340
Regulated genes 5
Built upon 49 sites [see more]
Predicted regulatory interactions in Lactobacillus casei BL23
Locus tag Position Score Sequence
Position: -74
Score: 4.7
Sequence: TTGGAACTATTCTAA
Locus tag: LCABL_04690
LCABL_04690 -74 4.7 TTGGAACTATTCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: npr
Ortholog function: NADH peroxidase (EC 1.11.1.1)
Lactobacillus brevis ATCC 367 LVIS_B09 -90 5.9 TTAGAATGATTCTAA
Lactobacillus casei ATCC 334 LSEI_0397 -74 4.7 TTGGAACTATTCTAA
Lactobacillus plantarum WCFS1 lp_2544 -95 5.1 TTAGAATAATTACAA
Lactobacillus rhamnosus GG LGG_00491 -75 5.5 TTGTAATTATTCTAA
Lactobacillus sakei subsp. sakei 23K LSA0575 -61 5 TTGTAATAATTATTA
Position: -192
Score: 5.3
Sequence: TTAGATTAATTCTAA
Locus tag: LCABL_25870
LCABL_25870 -192 5.3 TTAGATTAATTCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cueO
Ortholog function: Predicted copper oxidase
Lactobacillus casei ATCC 334 LSEI_2417 -192 5.3 TTAGATTAATTCTAA
Lactobacillus plantarum WCFS1 lp_0355 -88 5.6 TTAAAATAATTCTAA
Lactobacillus rhamnosus GG LGG_02415 -72 4.8 TTAGATTAATTCCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0502 -73 5.3 TTAGATTAATTCTAA
Position: -31
Score: 5.5
Sequence: TAATAATCATTCTAA
Locus tag: LCABL_26730
LCABL_26730 -31 5.5 TAATAATCATTCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ahpC
Ortholog function: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)
Lactobacillus brevis ATCC 367 LVIS_0086 -82 4.9 TTAGAATCATTCTTG
Lactobacillus casei ATCC 334 LSEI_2506 -31 5.5 TAATAATCATTCTAA
Lactobacillus fermentum IFO 3956 LAF_0409 -32 5 TGATAATCGTTCTAA
Lactobacillus reuteri JCM 1112 LAR_1019 -94 5.6 TTAGAATTGTTCTAA
-33 5.7 TAAGAATGATTCTAA
Position: -40
Score: 5.8
Sequence: TTAGAATGATTATAA
Locus tag: LCABL_27540
LCABL_27540 -40 5.8 TTAGAATGATTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybbL
Ortholog function: Predicted ABC transporter, ATP-binding protein
Lactobacillus casei ATCC 334 LSEI_2588 -40 5.8 TTAGAATGATTATAA
Position: -80
Score: 5
Sequence: TTATATTCGTTCTAA
Position: -46
Score: 5.2
Sequence: TTGTAATGGTTATAA
Locus tag: LCABL_30050
LCABL_30050 -80 5 TTATATTCGTTCTAA
-46 5.2 TTGTAATGGTTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cadA
Ortholog function: Predicted cation-transporting ATP-ase
Lactobacillus brevis ATCC 367 LVIS_0392 -52 4.6 CAATAATTGTTATAA
Lactobacillus casei ATCC 334 LSEI_2799 -80 5 TTATATTCGTTCTAA
-46 5.2 TTGTAATGGTTATAA
Lactobacillus plantarum WCFS1 lp_3327 -93 5.4 TTAGAATCATTCTTA
Lactobacillus rhamnosus GG LGG_02803 -80 5 TTATATTCGTTCTAA
-46 5.2 TTGTAATGGTTATAA
Lactobacillus sakei subsp. sakei 23K LSA0969 -65 5.3 TGATAATAATTCTAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0169 -93 5.5 TTATAATTTTTCTAA
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