Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LexA regulog to Lactobacillus brevis ATCC 367

Reference regulog properties
Source regulog: LexA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus brevis ATCC 367
Orthologous TF(s) No orthologous TFs found
Regulated genes 9
Built upon 99 sites [see more]
Predicted regulatory interactions in Lactobacillus brevis ATCC 367
Locus tag Position Score Sequence
Position: -101
Score: 4.9
Sequence: GCGAAAGTATGTTCGG
Locus tag: LVIS_0648
LVIS_0648 -101 4.9 GCGAAAGTATGTTCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrB
Ortholog function: Excinuclease ABC, subunit B
Lactobacillus acidophilus NCFM LBA0688 -87 4.6 GCGAAAACACGTTCGT
Lactobacillus brevis ATCC 367 LVIS_0648 -101 4.9 GCGAAAGTATGTTCGG
Lactobacillus casei ATCC 334 LSEI_0956 -206 5 GCGAAAGTATGTTCGC
-127 4.2 ACGAAATTTTGTTTGG
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0549 -64 4.1 TAGAATCTATGTTCGG
Lactobacillus fermentum IFO 3956 LAF_0353 -99 4.7 ACGAATAAACGTTCGT
Lactobacillus helveticus DPC 4571 lhv_0729 -86 4.6 GCGAAAACACGTTCGT
Lactobacillus johnsonii NCC 533 LJ0863 -86 5 GCGAAAATACGTTCGC
Lactobacillus plantarum WCFS1 lp_0772 -146 5 GCGAAAGTATGTTCGA
Lactobacillus reuteri JCM 1112 LAR_0372 -132 4.4 ACGAATACATGTTTGG
Lactobacillus rhamnosus GG LGG_00923 -271 5 GCGAAAGTATGTTCGC
Lactobacillus sakei subsp. sakei 23K LSA0523 -190 4.9 GCGAAAATACGTTCGG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0392 -89 4.9 TAGAACGTTTGTTCGT
Oenococcus oeni PSU-1 OEOE_0372 -50 4.2 GGGAACTAATGTTCGC
Pediococcus pentosaceus ATCC 25745 PEPE_0448 -127 4.9 GCGAAAGTATGTTCGG
Position: -86
Score: 4.7
Sequence: ACGAACATTTGTTCAT
Locus tag: LVIS_0763
LVIS_0763 -86 4.7 ACGAACATTTGTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnaE
Ortholog function: DNA polymerase III alpha subunit (EC 2.7.7.7)
Lactobacillus brevis ATCC 367 LVIS_0763 -86 4.7 ACGAACATTTGTTCAT
Lactobacillus plantarum WCFS1 lp_1899 -191 4.3 TAGAACAACTGTTTGG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0774 -29 4.5 GAAAACGGATGTTCGT
Oenococcus oeni PSU-1 OEOE_1000 -45 5 GCGAACATACTTTCGT
Position: -70
Score: 4.7
Sequence: TTGAACATACGTTCGG
Locus tag: LVIS_0804
LVIS_0804 -70 4.7 TTGAACATACGTTCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: parE
Ortholog function: Topoisomerase IV subunit B (EC 5.99.1.-)
Lactobacillus brevis ATCC 367 LVIS_0804 -70 4.7 TTGAACATACGTTCGG
Lactobacillus plantarum WCFS1 lp_1840 -185 4.9 GCGAACGTGTGTTTGC
Lactobacillus reuteri JCM 1112 LAR_0752 -45 4.6 TCGAACATACGTTTAG
Lactobacillus rhamnosus GG LGG_01419 -179 4.5 ACGAACACACATTCGA
Lactobacillus sakei subsp. sakei 23K LSA0976 -113 4.7 GCGAACATACATTTGG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1364 -36 4.3 ACGAACACTGGTTCGT
Oenococcus oeni PSU-1 OEOE_1026 -8 4.8 ACGAATGAATGTTCGC
Position: -27
Score: 4.7
Sequence: CAGAACATACGTTTGG
Locus tag: LVIS_0812
LVIS_0812 -27 4.7 CAGAACATACGTTTGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: xerC
Ortholog function: Site-specific DNA-tyrosine recombinase, XerC
Lactobacillus brevis ATCC 367 LVIS_0812 -112 4.1 TAAAACAAATATTTTA
-27 4.7 CAGAACATACGTTTGG
Lactobacillus casei ATCC 334 LSEI_1415 -26 5 GAAAACATACGTTCGA
Lactobacillus helveticus DPC 4571 lhv_1253 -77 4.9 TAAAACATTTGTTCGA
Lactobacillus johnsonii NCC 533 LJ1177 -28 4.7 ACAAACCTACGTTCGA
Lactobacillus rhamnosus GG LGG_01425 -27 5.1 GAAAACATATGTTCGA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1797 -25 4.5 TCAAATGAATGTTCGG
Position: -49
Score: 4.2
Sequence: GCAAACGCCCGTTCGG
Locus tag: LVIS_1226
LVIS_1226 -49 4.2 GCAAACGCCCGTTCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dinP
Ortholog function: DNA polymerase IV (EC 2.7.7.7)
Lactobacillus brevis ATCC 367 LVIS_1226 -49 4.2 GCAAACGCCCGTTCGG
Lactobacillus plantarum WCFS1 lp_2280 -85 4.8 TTGAACGTATGTTCGT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1586 -32 3.9 AAGAACACTTGTTCCT
Position: -64
Score: 4.4
Sequence: CCAAACAAACATTCGG
Locus tag: LVIS_1383
LVIS_1383 -64 4.4 CCAAACAAACATTCGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrC
Ortholog function: Nuclease subunit of the excinuclease complex
Lactobacillus brevis ATCC 367 LVIS_1383 -64 4.4 CCAAACAAACATTCGG
Lactobacillus casei ATCC 334 LSEI_1346 -29 4.9 GCGAACATTTGTTTTA
Lactobacillus rhamnosus GG LGG_01358 -29 4.9 GCGAACATTTGTTTTA
Lactobacillus sakei subsp. sakei 23K LSA1055 -35 4.4 ACGAACACTTGTTTTG
Pediococcus pentosaceus ATCC 25745 PEPE_1135 16 3.9 TTGAACATAAGTTGGC
Position: -70
Score: 4.1
Sequence: TCGAACACGCGTTCAA
Locus tag: LVIS_1870
LVIS_1870 -70 4.1 TCGAACACGCGTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: srmB
Ortholog function: DinG family ATP-dependent helicase
Lactobacillus brevis ATCC 367 LVIS_1870 -70 4.1 TCGAACACGCGTTCAA
Lactobacillus casei ATCC 334 LSEI_0288 -55 4.5 GAGAATGTATGTTCTA
Lactobacillus plantarum WCFS1 lp_0308 -52 4.6 ACGAACAGATGTTTTA
Lactobacillus rhamnosus GG LGG_00328 -55 4.3 CAGAATGTATGTTCTA
Position: -202
Score: 4.4
Sequence: TTGAACGTGTGTTCGT
Locus tag: LVIS_2268
LVIS_2268 -202 4.4 TTGAACGTGTGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: addB
Ortholog function: ATP-dependent nuclease, subunit B
Lactobacillus acidophilus NCFM LBA1166 -8 4.1 GCGAACAAATGATCAA
Lactobacillus brevis ATCC 367 LVIS_2268 -202 4.4 TTGAACGTGTGTTCGT
Lactobacillus fermentum IFO 3956 LAF_0036 -75 4.1 GCGAACATTCATTCCC
Lactobacillus helveticus DPC 4571 lhv_1274 -8 4.1 GCGAACAAATGATCAA
Lactobacillus plantarum WCFS1 lp_2694 -32 4.3 GAGAACGTTTGTTCAG
Lactobacillus reuteri JCM 1112 LAR_0047 -67 4.8 AAGAATATATGTTCGT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1482 -62 4.3 ACGAACAATCGTGCGC
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