Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of ArgR regulog to Carnobacterium sp. AT7

Reference regulog properties
Source regulog: ArgR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor, activator
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Firmicutes
Propagated regulon:
Target genome Carnobacterium sp. AT7
Orthologous TF(s) CAT7_09260, CAT7_00160, CAT7_04719
Regulated genes 10
Built upon 27 sites [see more]
Predicted regulatory interactions in Carnobacterium sp. AT7
Locus tag Position Score Sequence
Position: 4
Score: 3.5
Sequence: ATATCTTAATTATGAAAA
Locus tag: CAT7_06051
CAT7_06051 4 3.5 ATATCTTAATTATGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argB
Ortholog function: Acetylglutamate kinase (EC 2.7.2.8)
Lactobacillus fermentum IFO 3956 LAF_0724 -220 4.9 TGTGTATAAATATTTAGT
Lactobacillus plantarum WCFS1 lp_0530 -117 4.5 AATGAATATTTTTTCAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0058 -71 3.4 TTTGCATATTTATTGTAT
Position: -137
Score: 3.9
Sequence: TTTTAGTTATTATACATT
Position: -126
Score: 4
Sequence: ATACATTATATATACATT
Position: -122
Score: 3.6
Sequence: ATTATATATACATTAAAA
Position: -115
Score: 3.5
Sequence: ATACATTAAAAGTATAAT
Position: -102
Score: 3.8
Sequence: ATAATATATGTATAAATT
Position: -96
Score: 3.9
Sequence: TATGTATAAATTAATTAA
Position: -40
Score: 3.8
Sequence: TACTGATAATAATTAAAA
Position: -37
Score: 3.7
Sequence: TGATAATAATTAAAATTA
Position: -33
Score: 3.5
Sequence: AATAATTAAAATTACATG
Locus tag: CAT7_06061
CAT7_06061 -137 3.9 TTTTAGTTATTATACATT
-126 4 ATACATTATATATACATT
-122 3.6 ATTATATATACATTAAAA
-115 3.5 ATACATTAAAAGTATAAT
-102 3.8 ATAATATATGTATAAATT
-96 3.9 TATGTATAAATTAATTAA
-40 3.8 TACTGATAATAATTAAAA
-37 3.7 TGATAATAATTAAAATTA
-33 3.5 AATAATTAAAATTACATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Lactobacillus fermentum IFO 3956 LAF_0726 -220 4.9 TGTGTATAAATATTTAGT
Lactobacillus plantarum WCFS1 lp_0528 -117 4.5 AATGAATATTTTTTCAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0060 -71 3.4 TTTGCATATTTATTGTAT
Position: 19
Score: 3.3
Sequence: TAACGAAAATTATGGTAA
Locus tag: CAT7_02814
CAT7_02814 19 3.3 TAACGAAAATTATGGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: carB
Ortholog function: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5)
Lactobacillus fermentum IFO 3956 LAF_0728 -120 3.3 CGTTCATAAATAACCAAT
Lactobacillus plantarum WCFS1 lp_0526 -169 4.9 ATTGAAAAAATATTCATT
Lactobacillus reuteri JCM 1112 LAR_0080 -261 4.7 TTTGCATAAAAATTCATT
-136 3.6 CATACATATATATTCAAT
Position: -11
Score: 3.5
Sequence: GGATGACAAATATGAAAA
Locus tag: CAT7_03354
CAT7_03354 -11 3.5 GGATGACAAATATGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argH
Ortholog function: Argininosuccinate lyase (EC 4.3.2.1)
Lactobacillus casei ATCC 334 LSEI_2812 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus fermentum IFO 3956 LAF_1624 -136 2.3 CTTGCATTTTTATTTGAT
Lactobacillus plantarum WCFS1 lp_0776 -139 4.1 TCTGCATAAAAATTCTAT
Lactobacillus reuteri JCM 1112 LAR_0703 -164 4.7 ATTAAATAATTATTCTAT
Lactobacillus rhamnosus GG LGG_02818 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0305 -47 3.5 AATGAATAGATTATGAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1458 -73 3.8 ATTGCATATTTAATCAAA
Position: -265
Score: 2.9
Sequence: AATCAATTAAACCAAAAA
Position: -216
Score: 3.2
Sequence: TTTGTCTATTAATGATAA
Position: -214
Score: 2.9
Sequence: TGTCTATTAATGATAAAT
Position: -207
Score: 3.1
Sequence: TAATGATAAATTGATGAA
Position: -155
Score: 3.1
Sequence: GTTTTATGAATAAACGAT
Position: -151
Score: 3.4
Sequence: TATGAATAAACGATAAAT
Position: -144
Score: 4.2
Sequence: AAACGATAAATTTATACA
Position: -142
Score: 3.2
Sequence: ACGATAAATTTATACAAT
Position: -136
Score: 2.9
Sequence: AATTTATACAATATTATT
Position: -111
Score: 3.7
Sequence: AAAGCTAAAAAATACACT
Position: -109
Score: 3.3
Sequence: AGCTAAAAAATACACTAT
Position: -91
Score: 4.2
Sequence: TTAGCATAAAAAAACACT
Position: -89
Score: 3
Sequence: AGCATAAAAAAACACTTT
Position: -1
Score: 3.4
Sequence: TATGAATAAAGGAAAAGT
Locus tag: CAT7_03359
CAT7_03359 -265 2.9 AATCAATTAAACCAAAAA
-216 3.2 TTTGTCTATTAATGATAA
-214 2.9 TGTCTATTAATGATAAAT
-207 3.1 TAATGATAAATTGATGAA
-155 3.1 GTTTTATGAATAAACGAT
-151 3.4 TATGAATAAACGATAAAT
-144 4.2 AAACGATAAATTTATACA
-142 3.2 ACGATAAATTTATACAAT
-136 2.9 AATTTATACAATATTATT
-111 3.7 AAAGCTAAAAAATACACT
-109 3.3 AGCTAAAAAATACACTAT
-91 4.2 TTAGCATAAAAAAACACT
-89 3 AGCATAAAAAAACACTTT
-1 3.4 TATGAATAAAGGAAAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argG
Ortholog function: Argininosuccinate synthase (EC 6.3.4.5)
Lactobacillus casei ATCC 334 LSEI_2811 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus fermentum IFO 3956 LAF_1625 -136 2.3 CTTGCATTTTTATTTGAT
Lactobacillus plantarum WCFS1 lp_0775 -139 4.1 TCTGCATAAAAATTCTAT
Lactobacillus reuteri JCM 1112 LAR_0702 -164 4.7 ATTAAATAATTATTCTAT
Lactobacillus rhamnosus GG LGG_02817 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0306 -47 3.5 AATGAATAGATTATGAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1459 -73 3.8 ATTGCATATTTAATCAAA
Position: -142
Score: 4.4
Sequence: AATATATACATATATATA
Position: -126
Score: 4.1
Sequence: TATGTATAAAAGTAGTAT
Position: -105
Score: 3.8
Sequence: AGTGAAAAAAAGTAAATA
Position: -95
Score: 4
Sequence: AGTAAATATTTTTAAAAT
Position: -75
Score: 4.9
Sequence: ATTGTATAAATATCCTTT
Locus tag: CAT7_02564
CAT7_02564 -142 4.4 AATATATACATATATATA
-126 4.1 TATGTATAAAAGTAGTAT
-105 3.8 AGTGAAAAAAAGTAAATA
-95 4 AGTAAATATTTTTAAAAT
-75 4.9 ATTGTATAAATATCCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: artPQ
Ortholog function: Arginine ABC transporter, substrate-binding and permease protein
Lactobacillus brevis ATCC 367 LVIS_1200 -161 4.6 AATGTATAAATTTTTATA
-96 4.9 AGTGTATAAAAATAGATA
Lactobacillus casei ATCC 334 LSEI_2810 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus casei ATCC 334 LSEI_1344 -56 4.2 ATTGCATAAAAATCAATT
Lactobacillus plantarum WCFS1 lp_2111 -17 3.8 CTTGCATAAATAATCATA
Lactobacillus reuteri JCM 1112 LAR_0698 -253 4.7 ATTGCATAAATAAACATT
Lactobacillus rhamnosus GG LGG_02816 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus rhamnosus GG LGG_01356 -56 4.3 ATTGCATAAAAATTGAAT
Lactobacillus sakei subsp. sakei 23K LSA1057 -55 4.5 ATTGCATAAATATTTATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1541 -162 3.5 GTTACATAAATATATTTT
-82 4.3 CTTGCATAAATAAACAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0655 -62 5.3 ATTGTATAAAAATTCAAA
Pediococcus pentosaceus ATCC 25745 PEPE_1137 -94 5.2 AATGTATAAAAATTCATA
Position: 8
Score: 3.2
Sequence: AATAGATCATTTAAAAAA
Locus tag: CAT7_02569
CAT7_02569 8 3.2 AATAGATCATTTAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: artM
Ortholog function: Arginine ABC transporter, ATP-binding protein
Lactobacillus brevis ATCC 367 LVIS_1201 -161 4.6 AATGTATAAATTTTTATA
-96 4.9 AGTGTATAAAAATAGATA
Lactobacillus casei ATCC 334 LSEI_1345 -56 4.2 ATTGCATAAAAATCAATT
Lactobacillus fermentum IFO 3956 LAF_0624 -63 3.6 CTTGCATAATAATTCGTT
Lactobacillus plantarum WCFS1 lp_2110 -17 3.8 CTTGCATAAATAATCATA
Lactobacillus reuteri JCM 1112 LAR_0697 -253 4.7 ATTGCATAAATAAACATT
Lactobacillus rhamnosus GG LGG_01357 -56 4.3 ATTGCATAAAAATTGAAT
Lactobacillus sakei subsp. sakei 23K LSA1056 -55 4.5 ATTGCATAAATATTTATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1540 -162 3.5 GTTACATAAATATATTTT
-82 4.3 CTTGCATAAATAAACAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0629 -59 3 GATGCATATAAATTATAA
Pediococcus pentosaceus ATCC 25745 PEPE_1136 -94 5.2 AATGTATAAAAATTCATA
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