Propagation of ArgR regulog to Carnobacterium sp. AT7
| Source regulog: | ArgR - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | repressor, activator |
| Biological process: | Arginine degradation; Arginine biosynthesis |
| Effector: | Arginine |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Carnobacterium sp. AT7 |
| Orthologous TF(s) | CAT7_09260, CAT7_00160, CAT7_04719 |
| Regulated genes | 10 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: 4
Score: 3.5 Sequence: ATATCTTAATTATGAAAA
Locus tag: CAT7_06051
|
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| CAT7_06051 | 4 | 3.5 | ATATCTTAATTATGAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argB | ||||
| Ortholog function: Acetylglutamate kinase (EC 2.7.2.8) | ||||
| Lactobacillus fermentum IFO 3956 | LAF_0724 | -220 | 4.9 | TGTGTATAAATATTTAGT |
| Lactobacillus plantarum WCFS1 | lp_0530 | -117 | 4.5 | AATGAATATTTTTTCAAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0058 | -71 | 3.4 | TTTGCATATTTATTGTAT |
|
Position: -137
Score: 3.9 Sequence: TTTTAGTTATTATACATT
Position: -126
Score: 4 Sequence: ATACATTATATATACATT
Position: -122
Score: 3.6 Sequence: ATTATATATACATTAAAA
Position: -115
Score: 3.5 Sequence: ATACATTAAAAGTATAAT
Position: -102
Score: 3.8 Sequence: ATAATATATGTATAAATT
Position: -96
Score: 3.9 Sequence: TATGTATAAATTAATTAA
Position: -40
Score: 3.8 Sequence: TACTGATAATAATTAAAA
Position: -37
Score: 3.7 Sequence: TGATAATAATTAAAATTA
Position: -33
Score: 3.5 Sequence: AATAATTAAAATTACATG
Locus tag: CAT7_06061
|
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| CAT7_06061 | -137 | 3.9 | TTTTAGTTATTATACATT | |
| -126 | 4 | ATACATTATATATACATT | ||
| -122 | 3.6 | ATTATATATACATTAAAA | ||
| -115 | 3.5 | ATACATTAAAAGTATAAT | ||
| -102 | 3.8 | ATAATATATGTATAAATT | ||
| -96 | 3.9 | TATGTATAAATTAATTAA | ||
| -40 | 3.8 | TACTGATAATAATTAAAA | ||
| -37 | 3.7 | TGATAATAATTAAAATTA | ||
| -33 | 3.5 | AATAATTAAAATTACATG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argC | ||||
| Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) | ||||
| Lactobacillus fermentum IFO 3956 | LAF_0726 | -220 | 4.9 | TGTGTATAAATATTTAGT |
| Lactobacillus plantarum WCFS1 | lp_0528 | -117 | 4.5 | AATGAATATTTTTTCAAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0060 | -71 | 3.4 | TTTGCATATTTATTGTAT |
|
Position: 19
Score: 3.3 Sequence: TAACGAAAATTATGGTAA
Locus tag: CAT7_02814
|
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| CAT7_02814 | 19 | 3.3 | TAACGAAAATTATGGTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: carB | ||||
| Ortholog function: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) | ||||
| Lactobacillus fermentum IFO 3956 | LAF_0728 | -120 | 3.3 | CGTTCATAAATAACCAAT |
| Lactobacillus plantarum WCFS1 | lp_0526 | -169 | 4.9 | ATTGAAAAAATATTCATT |
| Lactobacillus reuteri JCM 1112 | LAR_0080 | -261 | 4.7 | TTTGCATAAAAATTCATT |
| -136 | 3.6 | CATACATATATATTCAAT | ||
|
Position: -11
Score: 3.5 Sequence: GGATGACAAATATGAAAA
Locus tag: CAT7_03354
|
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| CAT7_03354 | -11 | 3.5 | GGATGACAAATATGAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argH | ||||
| Ortholog function: Argininosuccinate lyase (EC 4.3.2.1) | ||||
| Lactobacillus casei ATCC 334 | LSEI_2812 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus fermentum IFO 3956 | LAF_1624 | -136 | 2.3 | CTTGCATTTTTATTTGAT |
| Lactobacillus plantarum WCFS1 | lp_0776 | -139 | 4.1 | TCTGCATAAAAATTCTAT |
| Lactobacillus reuteri JCM 1112 | LAR_0703 | -164 | 4.7 | ATTAAATAATTATTCTAT |
| Lactobacillus rhamnosus GG | LGG_02818 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0305 | -47 | 3.5 | AATGAATAGATTATGAAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1458 | -73 | 3.8 | ATTGCATATTTAATCAAA |
|
Position: -265
Score: 2.9 Sequence: AATCAATTAAACCAAAAA
Position: -216
Score: 3.2 Sequence: TTTGTCTATTAATGATAA
Position: -214
Score: 2.9 Sequence: TGTCTATTAATGATAAAT
Position: -207
Score: 3.1 Sequence: TAATGATAAATTGATGAA
Position: -155
Score: 3.1 Sequence: GTTTTATGAATAAACGAT
Position: -151
Score: 3.4 Sequence: TATGAATAAACGATAAAT
Position: -144
Score: 4.2 Sequence: AAACGATAAATTTATACA
Position: -142
Score: 3.2 Sequence: ACGATAAATTTATACAAT
Position: -136
Score: 2.9 Sequence: AATTTATACAATATTATT
Position: -111
Score: 3.7 Sequence: AAAGCTAAAAAATACACT
Position: -109
Score: 3.3 Sequence: AGCTAAAAAATACACTAT
Position: -91
Score: 4.2 Sequence: TTAGCATAAAAAAACACT
Position: -89
Score: 3 Sequence: AGCATAAAAAAACACTTT
Position: -1
Score: 3.4 Sequence: TATGAATAAAGGAAAAGT
Locus tag: CAT7_03359
|
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| CAT7_03359 | -265 | 2.9 | AATCAATTAAACCAAAAA | |
| -216 | 3.2 | TTTGTCTATTAATGATAA | ||
| -214 | 2.9 | TGTCTATTAATGATAAAT | ||
| -207 | 3.1 | TAATGATAAATTGATGAA | ||
| -155 | 3.1 | GTTTTATGAATAAACGAT | ||
| -151 | 3.4 | TATGAATAAACGATAAAT | ||
| -144 | 4.2 | AAACGATAAATTTATACA | ||
| -142 | 3.2 | ACGATAAATTTATACAAT | ||
| -136 | 2.9 | AATTTATACAATATTATT | ||
| -111 | 3.7 | AAAGCTAAAAAATACACT | ||
| -109 | 3.3 | AGCTAAAAAATACACTAT | ||
| -91 | 4.2 | TTAGCATAAAAAAACACT | ||
| -89 | 3 | AGCATAAAAAAACACTTT | ||
| -1 | 3.4 | TATGAATAAAGGAAAAGT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argG | ||||
| Ortholog function: Argininosuccinate synthase (EC 6.3.4.5) | ||||
| Lactobacillus casei ATCC 334 | LSEI_2811 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus fermentum IFO 3956 | LAF_1625 | -136 | 2.3 | CTTGCATTTTTATTTGAT |
| Lactobacillus plantarum WCFS1 | lp_0775 | -139 | 4.1 | TCTGCATAAAAATTCTAT |
| Lactobacillus reuteri JCM 1112 | LAR_0702 | -164 | 4.7 | ATTAAATAATTATTCTAT |
| Lactobacillus rhamnosus GG | LGG_02817 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0306 | -47 | 3.5 | AATGAATAGATTATGAAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1459 | -73 | 3.8 | ATTGCATATTTAATCAAA |
|
Position: -142
Score: 4.4 Sequence: AATATATACATATATATA
Position: -126
Score: 4.1 Sequence: TATGTATAAAAGTAGTAT
Position: -105
Score: 3.8 Sequence: AGTGAAAAAAAGTAAATA
Position: -95
Score: 4 Sequence: AGTAAATATTTTTAAAAT
Position: -75
Score: 4.9 Sequence: ATTGTATAAATATCCTTT
Locus tag: CAT7_02564
|
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| CAT7_02564 | -142 | 4.4 | AATATATACATATATATA | |
| -126 | 4.1 | TATGTATAAAAGTAGTAT | ||
| -105 | 3.8 | AGTGAAAAAAAGTAAATA | ||
| -95 | 4 | AGTAAATATTTTTAAAAT | ||
| -75 | 4.9 | ATTGTATAAATATCCTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: artPQ | ||||
| Ortholog function: Arginine ABC transporter, substrate-binding and permease protein | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1200 | -161 | 4.6 | AATGTATAAATTTTTATA |
| -96 | 4.9 | AGTGTATAAAAATAGATA | ||
| Lactobacillus casei ATCC 334 | LSEI_2810 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus casei ATCC 334 | LSEI_1344 | -56 | 4.2 | ATTGCATAAAAATCAATT |
| Lactobacillus plantarum WCFS1 | lp_2111 | -17 | 3.8 | CTTGCATAAATAATCATA |
| Lactobacillus reuteri JCM 1112 | LAR_0698 | -253 | 4.7 | ATTGCATAAATAAACATT |
| Lactobacillus rhamnosus GG | LGG_02816 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus rhamnosus GG | LGG_01356 | -56 | 4.3 | ATTGCATAAAAATTGAAT |
| Lactobacillus sakei subsp. sakei 23K | LSA1057 | -55 | 4.5 | ATTGCATAAATATTTATA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1541 | -162 | 3.5 | GTTACATAAATATATTTT |
| -82 | 4.3 | CTTGCATAAATAAACAAT | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0655 | -62 | 5.3 | ATTGTATAAAAATTCAAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1137 | -94 | 5.2 | AATGTATAAAAATTCATA |
|
Position: 8
Score: 3.2 Sequence: AATAGATCATTTAAAAAA
Locus tag: CAT7_02569
|
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| CAT7_02569 | 8 | 3.2 | AATAGATCATTTAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: artM | ||||
| Ortholog function: Arginine ABC transporter, ATP-binding protein | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1201 | -161 | 4.6 | AATGTATAAATTTTTATA |
| -96 | 4.9 | AGTGTATAAAAATAGATA | ||
| Lactobacillus casei ATCC 334 | LSEI_1345 | -56 | 4.2 | ATTGCATAAAAATCAATT |
| Lactobacillus fermentum IFO 3956 | LAF_0624 | -63 | 3.6 | CTTGCATAATAATTCGTT |
| Lactobacillus plantarum WCFS1 | lp_2110 | -17 | 3.8 | CTTGCATAAATAATCATA |
| Lactobacillus reuteri JCM 1112 | LAR_0697 | -253 | 4.7 | ATTGCATAAATAAACATT |
| Lactobacillus rhamnosus GG | LGG_01357 | -56 | 4.3 | ATTGCATAAAAATTGAAT |
| Lactobacillus sakei subsp. sakei 23K | LSA1056 | -55 | 4.5 | ATTGCATAAATATTTATA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1540 | -162 | 3.5 | GTTACATAAATATATTTT |
| -82 | 4.3 | CTTGCATAAATAAACAAT | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0629 | -59 | 3 | GATGCATATAAATTATAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1136 | -94 | 5.2 | AATGTATAAAAATTCATA |