Propagation of CopR regulog to Lactobacillus plantarum WCFS1
| Source regulog: | CopR - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CopY |
| Regulation mode: | repressor |
| Biological process: | Copper homeostasis |
| Effector: | Copper ion, (Cu2+) |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus plantarum WCFS1 |
| Orthologous TF(s) | lp_3365 |
| Regulated genes | 2 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -43
Score: 5.9 Sequence: TAAATTACAGATGTAGACAA
Locus tag: lp_3363
|
||||
| lp_3363 | -43 | 5.9 | TAAATTACAGATGTAGACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: copB | ||||
| Ortholog function: Copper-translocating P-type ATPase (EC 3.6.3.4) | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0269 | -68 | 5.4 | ATGACTACAGATGTAGACTC |
| -35 | 6 | AAGATTACATTTGTAGTCTA | ||
| Lactobacillus casei ATCC 334 | LSEI_1743 | -59 | 5 | TGGTTTACAGTTGTAAATTA |
| -29 | 6.1 | TAGATTACAGATGTAAACGG | ||
| Lactobacillus plantarum WCFS1 | lp_3363 | -69 | 4.7 | TCGTCTACAATTGTAAACTT |
| -43 | 5.9 | TAAATTACAGATGTAGACAA | ||
| Lactobacillus rhamnosus GG | LGG_01801 | -59 | 5 | TCGTTTACAGTTGTAAATTA |
| -29 | 6.2 | AAGATTACAAGTGTAAACGG | ||
| Lactobacillus sakei subsp. sakei 23K | LSA1460 | -35 | 6.4 | ATAATTACAAATGTAAACGA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1645 | -61 | 6.1 | AAGTTTACAAATGTAGTCTA |
| -35 | 5.9 | AAGATTACATTTGTAAACAG | ||
|
Position: -52
Score: 5.2 Sequence: ACGTTTACGGTTGTAAACTA
Locus tag: lp_3365
|
||||
| lp_3365 | -52 | 5.2 | ACGTTTACGGTTGTAAACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: copR | ||||
| Ortholog function: Copper transport transcriptional regulator CopR, CopY family | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0270 | -68 | 5.4 | ATGACTACAGATGTAGACTC |
| -35 | 6 | AAGATTACATTTGTAGTCTA | ||
| Lactobacillus casei ATCC 334 | LSEI_1745 | -59 | 5 | TGGTTTACAGTTGTAAATTA |
| -29 | 6.1 | TAGATTACAGATGTAAACGG | ||
| Lactobacillus plantarum WCFS1 | lp_3365 | -52 | 5.2 | ACGTTTACGGTTGTAAACTA |
| Lactobacillus rhamnosus GG | LGG_01802 | -59 | 5 | TCGTTTACAGTTGTAAATTA |
| -29 | 6.2 | AAGATTACAAGTGTAAACGG | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1646 | -61 | 6.1 | AAGTTTACAAATGTAGTCTA |
| -35 | 5.9 | AAGATTACATTTGTAAACAG | ||