Regulog CopR - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | CopY |
| Regulation mode: | repressor |
| Biological process: | Copper homeostasis |
| Effector: | Copper ion, (Cu2+) |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By TF family - CopY
- By effector - Copper ion, (Cu2+)
- By pathway - Copper homeostasis
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| copR |
*
Lactobacillus acidophilus NCFM Site: position = -32 score = 6.07433 sequence = ATAGTTACATTTGTAAACGA Gene: LBA1963: Copper transport transcriptional regulator CopR, CopY family |
*
Lactobacillus brevis ATCC 367 Site: position = -68 score = 5.40928 sequence = ATGACTACAGATGTAGACTC Site: position = -35 score = 6.0317 sequence = AAGATTACATTTGTAGTCTA Gene: LVIS_0270: Copper transport transcriptional regulator CopR, CopY family |
*2
Lactobacillus casei ATCC 334 Site: position = -29 score = 6.06101 sequence = TAGATTACAGATGTAAACGG Site: position = -59 score = 4.95698 sequence = TGGTTTACAGTTGTAAATTA Gene: LSEI_1745: Copper transport transcriptional regulator CopR, CopY family Site: position = -46 score = 4.57725 sequence = GAGACTACAAACGTAAACTT Site: position = -77 score = 5.38976 sequence = GTGACTACAGTTGTAAACTA Gene: LSEI_A02: Copper transport transcriptional regulator CopR, CopY family |
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -31 score = 6.01919 sequence = AAGGTTATAGATGTAAACGA Site: position = -72 score = 4.7991 sequence = TTGTCGACAAATGTAAACCA Gene: LBUL_0587: Copper transport transcriptional regulator CopR, CopY family |
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Lactobacillus fermentum IFO 3956 Site: position = -42 score = 4.56108 sequence = ACGGGTACACTTGTAAACTG Gene: LAF_1037: Copper transport transcriptional regulator CopR, CopY family |
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Lactobacillus helveticus DPC 4571 Site: position = -32 score = 6.26191 sequence = ATATTTACAAATGTAAACTA Site: position = -59 score = 5.34835 sequence = AAGTTTACAAATGTAAAATT Gene: lhv_2094: Copper transport transcriptional regulator CopR, CopY family |
*
Lactobacillus johnsonii NCC 533 Site: position = -61 score = 5.37472 sequence = TTGTTGACAAGTGTAAACTA Site: position = -33 score = 6.33884 sequence = ATGATTACATTTGTAAACGA Gene: LJ1835: Copper transport transcriptional regulator CopR, CopY family |
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Lactobacillus plantarum WCFS1 Site: position = -52 score = 5.19779 sequence = ACGTTTACGGTTGTAAACTA Gene: lp_3365: Copper transport transcriptional regulator CopR, CopY family |
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Lactobacillus reuteri JCM 1112 Site: position = -32 score = 5.10309 sequence = GAATTTACATGTGTAAACGC Gene: LAR_0894: Copper transport transcriptional regulator CopR, CopY family |
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Lactobacillus rhamnosus GG Site: position = -29 score = 6.21098 sequence = AAGATTACAAGTGTAAACGG Site: position = -59 score = 4.95698 sequence = TCGTTTACAGTTGTAAATTA Gene: LGG_01802: Copper transport transcriptional regulator CopR, CopY family |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -35 score = 6.4399 sequence = ATAATTACAAATGTAAACGA Gene: LSA1461: Copper transport transcriptional regulator CopR, CopY family |
Gene: LSL_1318: Copper transport transcriptional regulator CopR, CopY family |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -25 score = 5.92004 sequence = TAGTTTACAGTTGTAGACTA Gene: LEUM_0049: Copper transport transcriptional regulator CopR, CopY family |
*
Oenococcus oeni PSU-1 Site: position = -30 score = 5.8306 sequence = AAGTCTACAAGTGTAGACTA Gene: OEOE_1648: Copper transport transcriptional regulator CopR, CopY family |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -35 score = 5.92558 sequence = AAGATTACATTTGTAAACAG Site: position = -61 score = 6.11324 sequence = AAGTTTACAAATGTAGTCTA Gene: PEPE_1646: Copper transport transcriptional regulator CopR, CopY family |
Copper transport transcriptional regulator CopR, CopY family |
| copA2 |
Gene: LBA1964: Copper-exporting ATPase (EC 3.6.3.4) |
*
Lactobacillus brevis ATCC 367 Site: position = -139 score = 5.67733 sequence = AGGATTACATTTGTAAACAA Site: position = -184 score = 5.13496 sequence = TCGTTGACAGATGTAAACGA Gene: LVIS_0274: Copper-exporting ATPase (EC 3.6.3.4) |
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Gene: LBUL_0588: Copper-exporting ATPase (EC 3.6.3.4) |
*
Lactobacillus fermentum IFO 3956 Site: position = -80 score = 4.86402 sequence = TCGTTGACAATTGTAAACGG Site: position = -35 score = 5.73812 sequence = AGATTTACAGTTGTAAACGA Gene: LAF_0138: Copper-exporting ATPase (EC 3.6.3.4) |
Gene: lhv_2095: Copper-exporting ATPase (EC 3.6.3.4) |
Gene: LJ1836: Copper-exporting ATPase (EC 3.6.3.4) |
|
*
Lactobacillus reuteri JCM 1112 Site: position = -70 score = 4.55216 sequence = TTGTTGACAACTGTAAACTT Site: position = -27 score = 6.35405 sequence = ATGATTACAATTGTAAACTA Gene: LAR_0423: Copper-exporting ATPase (EC 3.6.3.4) |
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*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -35 score = 5.36788 sequence = GTGATTACAAATGTAAATTA Gene: LSL_1706: Copper-exporting ATPase (EC 3.6.3.4) |
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Copper-exporting ATPase (EC 3.6.3.4) |
| copA3 |
Gene: LBA1965: Copper-exporting ATPase (EC 3.6.3.4) |
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Gene: LAF_0139: Copper-exporting ATPase (EC 3.6.3.4) |
Gene: lhv_2096: Copper-exporting ATPase (EC 3.6.3.4) |
Gene: LJ1837: Copper-exporting ATPase (EC 3.6.3.4) |
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Gene: LAR_0424: Copper-exporting ATPase (EC 3.6.3.4) |
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Gene: LSL_1705: Copper-exporting ATPase (EC 3.6.3.4) |
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Copper-exporting ATPase (EC 3.6.3.4) |
| copA |
Gene: LBA1966: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: LVIS_0273: Copper-translocating P-type ATPase (EC 3.6.3.4) |
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Gene: LBUL_0589: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: LAF_0140: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: lhv_2097: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: LJ1838: Copper-translocating P-type ATPase (EC 3.6.3.4) |
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Gene: LAR_0425: Copper-translocating P-type ATPase (EC 3.6.3.4) |
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Gene: LSL_1704: Copper-translocating P-type ATPase (EC 3.6.3.4) |
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Copper-translocating P-type ATPase (EC 3.6.3.4) |
| LSEI_1744 |
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Gene: LSEI_1744: Hypothetical protein |
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Hypothetical protein |
| copB |
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Gene: LVIS_0269: Copper-translocating P-type ATPase (EC 3.6.3.4) |
2
Lactobacillus casei ATCC 334 Gene: LSEI_1743: Copper-translocating P-type ATPase (EC 3.6.3.4) Gene: LSEI_A01: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: LBUL_1157: Copper-translocating P-type ATPase (EC 3.6.3.4) |
|
*
Lactobacillus helveticus DPC 4571 Site: position = -177 score = 5.38976 sequence = GTGACTACAGTTGTAAACTA Site: position = -146 score = 5.14339 sequence = GAGACTACAAATGTAAACTT Gene: lhv_1944: Copper-translocating P-type ATPase (EC 3.6.3.4) |
|
*
Lactobacillus plantarum WCFS1 Site: position = -43 score = 5.85297 sequence = TAAATTACAGATGTAGACAA Site: position = -69 score = 4.72189 sequence = TCGTCTACAATTGTAAACTT Gene: lp_3363: Copper-translocating P-type ATPase (EC 3.6.3.4) |
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Gene: LGG_01801: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: LSA1460: Copper-translocating P-type ATPase (EC 3.6.3.4) |
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Gene: LEUM_0048: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: OEOE_1647: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Gene: PEPE_1645: Copper-translocating P-type ATPase (EC 3.6.3.4) |
Copper-translocating P-type ATPase (EC 3.6.3.4) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |